Panicum virgatum (switchgrass): 120673185
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Entry
120673185 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase Smurf1-like
KO
K12865
polyglutamine-binding protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120673185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120673185
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19 complex
120673185
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WW
WW_TCERG1
WW_USP8
Motif
Other DBs
NCBI-GeneID:
120673185
NCBI-ProteinID:
XP_039809849
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All DBs
Position
5N:complement(68201444..68208602)
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AA seq
491 aa
AA seq
DB search
MDNSQNQPLPPGVGTWPQAPPNHPPQFHSGPQSYHSPFDTRPDNASANGSDSAANIESAV
QEAVLHAQDIETQQVIQNQRHANTTSEPTTYGEDLLSNRRDPNALKEHLLKMTADHRAEM
ANKRGKPLHPNNGNVEIGNGYGVPGGGAYYAANLPSAQMNKPRDESDKEKCGNDLPDFLK
QRLRARGILKDETTNKNSTGTQKVDSQENQNKSVHELPPGWVEAKDPTTGAPYFYNQSTG
VSQWDRPVGAVNTMQHQVSSSLPENWEEAIDKTTGHKYYYNTKTQATQWEPPTSVNTIVT
PHVPTNTAVEPVTQTADIWDSQMQRCSGCGGWGVGLVQSWGYCNHCTRVQNLPFQQYPSY
TDNTAHSGNNGTRTQGNVAAKDRSSSKPPSGKPNRKDHRKRNRPEDDELDPMDPSSYSDA
PRGGWVVGLKGVQPRAADTTAAGPLFQQRPYPSPGAVLRKNAEVATHGKKRGGMAPITKR
GDGSDGLGEAD
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggataactctcagaatcaaccattaccacctggtgttggaacatggccacaggcacct
cccaatcacccgccacagttccattctggcccacagtcttatcattctccatttgacact
agacctgacaatgctagtgccaacggtagtgatagtgcagcaaatattgagtcagctgtc
caagaggctgttcttcacgcacaggacattgagacccagcaagtcatacaaaatcaaaga
catgcaaacacaacaagtgaacctacaacctatggggaagacttactgtctaaccgccgt
gaccctaatgcattgaaggaacacttgctaaagatgacagctgatcatcgtgcagagatg
gcaaacaaaagggggaagccacttcatccaaacaatggaaatgttgaaattggcaatggc
tatggtgtcccaggagggggtgcttattatgctgcaaacttgccaagtgctcaaatgaac
aaacctagagatgaatctgataaagaaaaatgtggaaatgatctccctgattttttgaag
cagaggttaagggcaaggggaattctcaaagatgagacaacaaataagaatagcacgggt
acacagaaagtggattctcaagaaaaccagaacaaatctgtgcatgagttgcctcctggt
tgggttgaagcaaaggacccgacaaccggtgctccttatttctacaatcaaagcaccgga
gtgagtcaatgggatcgtcccgttggtgctgtgaacaccatgcaacatcaagtttcttca
tccttgccagagaattgggaggaggcaattgataaaacaacaggccacaaatactattat
aatacaaagacacaggccacacagtgggagcctcctacttctgtgaacaccattgttaca
cctcatgttcccaccaacactgcagtagagccagtcactcaaactgcagatatttgggac
tctcaaatgcagagatgttcaggctgtggtggttggggagttggtcttgtccaatcttgg
ggatactgcaaccactgcacaagggttcaaaacctcccttttcaacaatatccatcttac
acagacaatacggcgcactctggtaacaatggtaccagaactcaggggaatgttgcagct
aaggacagatcaagctcaaaaccaccctctgggaaaccaaacagaaaagatcaccgcaaa
agaaatcgccccgaggatgatgagcttgacccgatggacccaagttcttactcagatgct
ccacggggtggctgggttgttggtttgaagggtgtacaaccacgagcagcagatactact
gcagctggacctttgttccaacaaagaccatatccctccccaggtgctgttttgaggaaa
aatgcagaagtagcaacccacggcaagaaacgtggtggtatggctccgataacaaaaaga
ggagatggcagcgatgggcttggggaggcggattag
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