Panicum virgatum (switchgrass): 120673902
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Entry
120673902 CDS
T07260
Name
(RefSeq) transcription factor PCL1-like
KO
K28173
GARP family transcription factor, LUX subfamily
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120673902
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-like factors
120673902
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myb_DNA-binding
DUF3141
Motif
Other DBs
NCBI-GeneID:
120673902
NCBI-ProteinID:
XP_039810878
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All DBs
Position
5N:complement(71821299..71822946)
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AA seq
262 aa
AA seq
DB search
MGEEAADDYDLDLDLLGGADDERVMEWETGLPGGEELTPLSQPLVPPGLAAAFRIPPEPG
RTLLDVHRASAATVSRLRRASSGSSFQPFVGGGGGGGEGAAVAAADAINNSSKRPRLVWT
PQLHKRFVDVVAHLGIKKAVPKTIMQLMNVEGLTRENVASHLQKYRLYVKRMQGLSNEGP
SASDHIFASTPVPHSLVHEPQPHQVPAPPPMYQYHHSMPVPLGMVPSNKSGGSGYAYGYG
YHHHQQQASHSQSHHHYRAGDN
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaggaggcggcggacgactacgacctggacctggacctgctgggcggcgccgat
gacgagcgggtgatggagtgggagactggcctccccggcggcgaggagctgaccccgctt
tcgcagccgctggtcccgccggggctggccgccgccttccgcatcccgccggagcccggg
cggacgctgcttgacgtgcaccgcgcgtcggcggccacggtgtcgcggctgcggcgcgcg
tcgtcggggtcgtcgttccagcccttcgtaggaggaggtggaggtggaggagaaggagca
gcggtggcagcagcagacgcaatcaacaactcgtcgaagcggccccggctggtgtggacg
ccgcagctgcacaagcggttcgtggacgtggtggcgcacctggggatcaagaaggcggtg
cccaagacgatcatgcagctgatgaacgtggaagggctgacgcgggagaacgtggcgagc
cacctgcagaagtaccggctgtacgtgaagcggatgcaggggctctccaacgaggggccc
tccgcctccgaccacatcttcgcctccacgcccgtgccgcacagcctcgtccacgagccg
cagccgcaccaggtgccggcgccgccgcccatgtaccagtaccaccactccatgcccgtc
cccttgggcatggtgcccagcaacaagagcggcggcagcggatacgcatacggatacgga
taccaccaccaccagcagcaggcttcccattcccagtcccaccaccactaccgcgccggc
gacaattga
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