Panicum virgatum (switchgrass): 120675054
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Entry
120675054 CDS
T07260
Name
(RefSeq) triosephosphate isomerase, cytosolic-like
KO
K01803
triosephosphate isomerase (TIM) [EC:
5.3.1.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00010
Glycolysis / Gluconeogenesis
pvir00051
Fructose and mannose metabolism
pvir00562
Inositol phosphate metabolism
pvir00710
Carbon fixation by Calvin cycle
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01200
Carbon metabolism
pvir01230
Biosynthesis of amino acids
Module
pvir_M00001
Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
pvir_M00002
Glycolysis, core module involving three-carbon compounds
pvir_M00003
Gluconeogenesis, oxaloacetate => fructose-6P
pvir_M00165
Reductive pentose phosphate cycle (Calvin cycle)
pvir_M00611
Oxygenic photosynthesis in plants and cyanobacteria
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
120675054
00051 Fructose and mannose metabolism
120675054
00562 Inositol phosphate metabolism
120675054
09102 Energy metabolism
00710 Carbon fixation by Calvin cycle
120675054
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120675054
Enzymes [BR:
pvir01000
]
5. Isomerases
5.3 Intramolecular oxidoreductases
5.3.1 Interconverting aldoses and ketoses, and related compounds
5.3.1.1 triose-phosphate isomerase
120675054
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
120675054
Exosomal proteins of bladder cancer cells
120675054
Exosomal proteins of melanoma cells
120675054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TIM
C2
DUF6137
Motif
Other DBs
NCBI-GeneID:
120675054
NCBI-ProteinID:
XP_039812080
LinkDB
All DBs
Position
5N:63361986..63369817
Genome browser
AA seq
450 aa
AA seq
DB search
MAARKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRLD
FAVAAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVAEKVAYALS
QGLKVIACIGETLEQREAGTTMDVVAAQTKAISEKVSDWTNIVLAYEPVWAIGTGKVATP
AQAQEVHDGLRKWLHSNVSPAVAESTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP
EFVDIIKAATVKSSSAYMPSPAPEVKEQRRGRPGRNSPRRRRDPWADVERRRREKMGKGV
LEVHLVDARGLSGSDFLGKIDPYVIVQYRSQERKSSVARDQGRNPCWNEVFKFQINSSAS
SAQHKLILRIMDHDHFSSDDFLGEATIDVTDIISLGAERGSYHLNAGKHNVVLADSTYHG
EIKVGITFTAAQVEEDDEDFGGWRRRSSNA
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaggaagttcttcgtcggcggcaactggaaatgcaacggcaccggcgaggac
gtgaagaagatcgtgaccgtgctcaacgaggctgaggtgccctccgaggacgtcgtcgag
gtggtggtgagcccgccgttcgtcttcctgccccaggtcaaggggctgctgcgcctggac
tttgccgtcgccgcgcagaactgctgggtgcgcaagggcggtgccttcaccggcgagatc
agtgctgagatgctggtgaacctgcaggtgccgtgggtcatcttggggcactcggagcgc
agagctctgatgggcgaatccagtgatttcgttgccgaaaaagttgcatatgcactctcc
caaggtctcaaggtaattgcttgcataggcgagacccttgagcagagggaagcaggaaca
acaatggatgttgttgctgcgcaaacaaaggctatttctgagaaggtatcagattggaca
aacattgtattggcctatgagccagtttgggctattgggaccggcaaggttgcaacccct
gcccaggctcaggaggttcacgatggtctgagaaagtggctccactctaatgttagtcct
gcagttgctgaatcgaccaggataatttatggagggtctgtgaatggagctaactgcaaa
gagcttgcggctcaaccagatgttgatggattccttgttggtggagcgtcactgaagccc
gagtttgtggacatcatcaaggctgcgactgtcaagtcttcatctgcttacatgccttcg
ccagcgccggaagttaaagaacaaagaagaggacgccccggccgcaactcccctagacga
agaagagacccttgggctgacgtcgagcggagaaggcgagagaagatggggaagggcgtc
ctggaggtgcacctcgtcgacgccaggggcctctccggcagcgatttcctagggaagatc
gacccctacgtgatcgtgcagtaccggagtcaggagcgcaagagcagcgtcgcccgagac
caggggaggaacccgtgctggaacgaggtgttcaagttccagatcaactcttcggcgtcc
agcgcgcagcacaagctcatcctccggatcatggaccacgaccacttctccagcgacgac
ttcctcggcgaggctacgatcgacgtgacggacatcatcagcttgggcgcggagcgcggc
tcgtaccacctcaacgcggggaagcacaacgtggtcctcgccgacagcacgtaccacggc
gagatcaaggtcggcatcaccttcaccgccgcccaggttgaggaagatgatgaggatttt
ggaggctggaggcgcagaagctccaatgcgtag
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