Panicum virgatum (switchgrass): 120678686
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Entry
120678686 CDS
T07260
Name
(RefSeq) probable 4-coumarate--CoA ligase 1
KO
K01904
4-coumarate--CoA ligase [EC:
6.2.1.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00130
Ubiquinone and other terpenoid-quinone biosynthesis
pvir00940
Phenylpropanoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00039
Monolignol biosynthesis, phenylalanine/tyrosine => monolignol
pvir_M00137
Flavanone biosynthesis, phenylalanine => naringenin
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
120678686
09110 Biosynthesis of other secondary metabolites
00940 Phenylpropanoid biosynthesis
120678686
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.12 4-coumarate---CoA ligase
120678686
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Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120678686
NCBI-ProteinID:
XP_039815914
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Position
6N:18991064..18995666
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AA seq
568 aa
AA seq
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MGSTEQQPPEPVAAASAVVEASPEIIFRSKLPDIAITNTLPLHRYCFERLAEVADRPCLI
DGATGFVRTYAEVDRLTRRLAAALRREPFGLGRGAVVMNLVLNSAEFVLSFFAASRVGAA
VTTANPMSTPHDIANQIAASGATVVFTESMAADKLPGGLTVVLIDARRDGCLHFWDDVMA
SVPDDEAAAAAGDQEAGDSEFDPDDVAALPYSSGTTGLPKGVMLTHRSLSTSVAQQVDGD
NPNIGFTAADVILCSLPMFHIYSLNTILMCGLRVGAAIVVMRRFDLARMMELVARHRITV
APLVPPIVVAVAKSDQAAAHDLSSVRMVLSGAAPMGKDLEDAFMAKLPGAVLGQGYGMTE
AGPVLSMCLAFAKEPFKVKSGACGTVVRNAELKIVDPDTGKSLGRNQPGEICIRGQQIMK
GYLNNPEATKNSIDADGWLHTGDVGFVDDDDEIFIVDRLKEIIKYKGLQVAPAELEALLI
THPSIVDAAVVGKQVEPEIGEIPVAFVAKAEGSELSEDDVKQFVAKEVIYYKKVREVIFV
DKIPKAPSGKILRKELRKQHQQQHPQSV
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggggtccaccgagcagcagccgccggagccggtggccgccgcctccgccgtggtggag
gcgtcgccggagatcatcttccggtccaagctcccggacatcgccatcaccaacaccctc
ccgctgcaccgctactgcttcgagcggctcgccgaggtggccgaccgcccctgcctcatt
gacggcgccacgggcttcgtccgcacctacgccgaggtcgaccgcctcacccgccgcctc
gcggcggcgctccgtcgcgagccgttcgggctcggccgcggcgcggtggtcatgaacctg
gtgctcaactcggcggagttcgtgctctccttcttcgccgcgtcgcgcgtcggcgccgcg
gtcaccaccgccaacccgatgtccacgccgcacgacatcgccaaccagatcgcggcgtcg
ggcgccacggtcgtgttcaccgagtccatggccgcggacaagctccccggcggcctcacg
gtcgtcctcatcgacgcgcgccgcgacggctgcctccacttctgggacgacgtcatggcc
agcgtccccgacgacgaggccgccgccgccgccggcgaccaggaggcgggcgacagcgag
ttcgaccccgacgacgtggcggcgctgccgtactcgtccggcacgacggggctccccaag
ggcgtgatgctgacgcaccggagcctgagcaccagcgtggcgcagcaggtcgacggcgac
aaccccaacatcggcttcaccgccgccgacgtcatcctctgctccctccccatgttccac
atctactcgctcaacaccatcctgatgtgcgggctccgcgtcggcgccgccatcgtggtc
atgcgccgcttcgacctcgccaggatgatggagctcgtggcgcggcaccggatcaccgtc
gcgccgctcgtgccgcccatcgtcgtcgccgtggccaagagcgaccaggccgcggcgcac
gacctgtcgtcggtcaggatggtgctctccggcgccgcgcccatgggcaaggacctcgag
gacgcgttcatggccaagctccccggcgccgtgctcggacagggctacggcatgacggag
gccggtccggtgctgtccatgtgcctggcgttcgccaaggagcccttcaaggtgaagtcc
ggcgcctgcggcacggtggtgcgcaacgccgagctgaagatcgtcgaccccgacaccggc
aagtccctcggccgcaaccagcccggggagatctgcatcagggggcaacagatcatgaaa
ggttacctgaacaacccggaggccacgaagaacagcatcgacgctgacgggtggctgcac
accggcgacgtcgggttcgtggatgacgacgacgagatcttcatagtcgacaggctcaag
gagatcatcaagtacaagggcctacaggtggcccctgccgagttggaggcccttctcatc
actcacccgagcatcgtcgacgctgccgttgttgggaaacaagtcgagccagaaattggc
gaaatcccggtcgcctttgtggccaaggcagaagggagtgagctcagcgaagatgacgtg
aagcaatttgtggcaaaggaggtgatctactacaagaaggtccgcgaggtgatttttgtt
gacaagatccccaaggcgccatcgggcaagatccttcgcaaggagctaaggaaacagcac
cagcagcagcacccacaatctgtgtga
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