Panicum virgatum (switchgrass): 120679861
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Entry
120679861 CDS
T07260
Name
(RefSeq) probable 4-coumarate--CoA ligase 5
KO
K01904
4-coumarate--CoA ligase [EC:
6.2.1.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00130
Ubiquinone and other terpenoid-quinone biosynthesis
pvir00940
Phenylpropanoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00039
Monolignol biosynthesis, phenylalanine/tyrosine => monolignol
pvir_M00137
Flavanone biosynthesis, phenylalanine => naringenin
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
120679861
09110 Biosynthesis of other secondary metabolites
00940 Phenylpropanoid biosynthesis
120679861
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.12 4-coumarate---CoA ligase
120679861
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GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120679861
NCBI-ProteinID:
XP_039817458
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Position
6N:complement(41449403..41451905)
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AA seq
540 aa
AA seq
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MGSLTTEPRAETVVFRSTLPDIAIPDHLPLHDYVFERLAGRRDRACLIDGATGEALTFGD
VDRLSRRVAAGMRAALGVRPGGTVMLLLPNSVEFALAFLACSRLGAAATTANPLHTPPEI
AKQAAASGATVVVTEPAFVAKVRGLAGVAVVATGGGAEGCVSFADLAAADELAEAAAIDV
SNDVVALPYSSGTTGLPKGVMLSHRGLVTSVAQLVDGDNPNLDLREDDVVLCVLPMFHVY
SLHSILLCGMRAGAALVIMKRFDSARMCELVERHGVTVAPLVPPIVVEIAKSDAIDRHDL
SSVRMVISGAAPMGKELQDILRAKLPRAVLGQGYGMTEAGPVLSMCMAFAKEPLPVKSGA
CGTVVRNAELKIIDPETGLSLPRNQPGEICIRGKQIMKGYLNNPEATAKTIDAEGWLHTG
DIGYVDDDDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHPGIADAAVVPMKDDSCGEIP
VAFVVTRGGSDITEDEVKQYVAKQVVFYKRLHKIFFVETIPKAPSGKILRKDLRAKLAAC
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgggatcgctgacgacggagccgcgggccgagacggtggtgttccgctcgacgctcccg
gacatcgccatcccggaccacctcccgctccacgactacgtcttcgagcgcctggcgggc
cgccgcgaccgcgcctgcctcatcgacggcgccacgggggaggcgctcacgttcggggac
gtggaccgcctgtcgcgccgcgtggcggcggggatgcgcgccgccctcggcgtgcgcccc
ggcggcacggtgatgctgctgctccccaactccgtcgagttcgcgctcgcgttcctcgcg
tgctcccgcctcggcgccgccgccaccacggccaacccgctccacaccccgcccgagatc
gccaagcaggccgcggcctccggcgccaccgtcgtcgtcaccgagccggcgttcgtcgcc
aaggtgcgcgggctcgccggcgtcgccgtcgtcgccacgggcggcggcgccgaggggtgc
gtctcgttcgccgacctcgccgccgccgacgagctggcggaggcggcggccatcgacgtg
tcgaacgacgtggtcgcgctgccgtactcgtccggcacgacggggctgcccaagggggtc
atgctgtcgcaccgggggttggtgaccagcgtggcgcagctcgtcgacggcgacaacccg
aacctcgacctccgggaggacgacgtcgtcctctgcgtgctgcccatgttccacgtgtac
tcgctgcactccatcctcctctgcgggatgcgcgccggcgcggcgctcgtgatcatgaag
cgcttcgacagcgcccggatgtgcgagctcgtggagcggcacggcgtcacggtcgcgccg
ctcgtgccgcccatcgtggtggagattgccaagagcgacgccatcgaccgccacgaccta
tcctcggtgcgcatggtcatctccggcgccgcgcccatgggcaaggagctgcaggacatc
ctgcgcgctaagctccctcgcgccgtgctcggacagggctatgggatgacagaggcaggg
ccggtgctctcgatgtgcatggcatttgccaaggagcccttgccggtgaagtctggcgcc
tgcggcacggtggtgaggaacgccgagctcaagatcatcgacccggagaccggcctgtcc
ctaccccgcaaccagcctggggagatttgcatcaggggcaagcagataatgaaagggtac
ctgaacaatccggaggccacggcgaagaccatcgacgcggaggggtggctgcacaccggc
gacattgggtacgtcgacgacgacgacgagatcttcatcgtggaccggctcaaggagctc
atcaagtacaaggggttccaggtcgcccccgcggagctcgaggccatgctcatcgcgcac
cccggcatcgccgacgccgccgtcgtcccgatgaaggatgactcctgcggcgagatcccg
gtggcgttcgtcgtgacgcgcggcggctccgacatcaccgaggacgaggtcaagcagtac
gtggcaaaacaggttgtgttctacaagaggcttcacaagattttcttcgtggagactatt
ccgaaggcgccatctggcaaaattttgaggaaggacctgagggccaagctggcagcgtgc
tga
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