Panicum virgatum (switchgrass): 120684362
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Entry
120684362 CDS
T07260
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120684362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120684362
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120684362
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
120684362
NCBI-ProteinID:
XP_039822157
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Position
8N:complement(1387954..1392704)
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AA seq
804 aa
AA seq
DB search
MGIPSFYKWLVTKYPSVVSSAEESPDGAIYDNLYLDMNCIIHPCFHPQDDMHADTDVCPP
TTVTEVLESIFEYLDRLFRIVRPTRLLYLAVDGVVPCAKMNRVRRGRFHSALLARDEALK
EEEMLRELRAQGKEVPPPEISEVSDRNVITPGTEFMEKLSQALQYYIRARLNTDPGWKDI
MVILSDANVPGEGEHKIMSFIRAQRCMEGYDPNTRHCLYGHDADLIMLALASHEVHFSIL
REDVLLPNQAETEGKSNKPYLFLNIWVLREYLEIELKILDPVCEPDIERLIDDFIFICFL
VGNDFIPHIPSLETHECAVDILIEVYKTTFNKMGGYIVNTDKVKEKHGSYLDISRLEIFF
HELSMYEEKIFLKRYELEQDSLQKEYREMLCEASESERPELRRKLDDLLFNEDCPYDSIR
LGLPGWKSRFHREYFGLETSNEIGNLQNDMAQKYLEGLCWVFQCYFTGVPSWSWYYPFYV
SPFVSDLKSLSRFQISFALDKPLRPFDQLMAVSPSQRWLKLNLPYCYCCKFMGREEYYPK
LQTDMNGKRFLWSGIISEERLLASTKAVDEELTMDEMRRNTTRQDKIFLHRNSNALAHIN
GVIIQTSYCPLQKLPIDSATSGIGGWLSPDDNAGGLSNSFFPSPMKNLLDITNDQAISAT
FFNPEAVNPTPRLLSNVRVPDKTVTGADISKRPLWHTYPGSRPPPPTIQRPDSIWKPSTP
AAPREEHKHAGTGWMGRGRGNNAIAAAQAQQLATSTRSSSYGHGTATDTPRSSSSSYGYR
KTGFHRVDTPRSRFDNDGAQPRRW
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggggataccttctttctacaagtggcttgtgaccaaatacccaagcgtcgtctcctcc
gcagaggagagccctgatggcgccatctatgacaacctctacctcgacatgaattgcatc
atccacccttgcttccacccgcaagacgatatgcatgcagacacagatgtgtgtcctccg
acgacggtcaccgaggtcttggagtccattttcgagtacttggaccgcctgttccgcatc
gtcaggccgacaaggctcctctacttggcagtagatggcgttgttccttgcgccaaaatg
aaccgagtgcgacggggacgtttccactctgctttgctagcaagggatgaggcgcttaaa
gaggaagagatgctgagggaattaagagctcaagggaaggaggtgccaccgccagagatt
tcagaggtttctgaccgcaatgtgatcacaccggggactgaattcatggagaagctatca
caagcgctccaatactacatccgtgccagattgaacactgaccctgggtggaaagacata
atggtcatactctctgatgcaaatgttcccggagaaggagagcacaagatcatgtctttc
atccgtgcacaacgctgtatggaaggctatgaccccaatactcgacactgcttgtatggg
catgatgcagatctgataatgcttgctttggcatctcatgaggtccacttctctattttg
cgtgaggatgtgctactcccaaatcaggcagaaacagaagggaaatcaaataaaccttat
ctgtttttgaacatatgggttctgagagagtacttggagattgaattgaagatactggat
ccagtttgcgagcctgacattgagaggctaatagatgacttcatctttatttgtttcttg
gtgggaaatgatttcatcccacatattccatcacttgagacacatgagtgtgcagtcgat
attctcatcgaagtgtacaaaacaaccttcaacaaaatgggagggtatattgtcaacaca
gataaagtcaaagaaaaacatggttcatatctagacatctcaaggttggaaatatttttt
catgaactgtccatgtatgaagagaaaatttttctcaaaagatatgagctggagcaggat
tccttgcagaaggaatatcgtgaaatgttgtgtgaagcttcagaaagtgaaagaccagag
ctgaggcgaaaactagatgacctccttttcaatgaagactgcccatatgacagtataaga
ctgggattaccaggatggaaatcccggttccacagggaatattttggtctcgaaacttcc
aatgaaattggaaacctgcagaacgacatggcccagaagtatttagaaggactttgctgg
gtgtttcaatgctattttacgggtgtaccatcatggagctggtactacccattctatgtt
tctccattcgtatctgatctcaaaagtctttctcggtttcagatatctttcgctttggac
aaaccactgcgaccatttgatcagctcatggcagtttcgccttcacaaaggtggcttaag
cttaacctcccatactgttactgctgcaaatttatgggacgtgaagaatactatccgaag
ttgcagactgacatgaatgggaaacgtttcttgtggagtggtattatctctgaggaacgg
ctgcttgcgagcaccaaagcagtagacgaagagctgacgatggatgagatgagaaggaat
actactcggcaagacaagatctttctgcacaggaactcaaacgctctagcacatattaat
ggagttattatacagacatcatactgtccactgcagaagcttccgatagattcagctacg
agtggaattggagggtggctgtcgcctgatgacaatgctggtggcctgagcaacagtttc
tttccctcgcccatgaaaaatctgctggacatcacaaatgatcaggcaatatcagccacg
ttcttcaaccctgaggcagtgaatccaaccccaagactgcttagcaatgtcagggtacct
gataagactgtcacgggagctgacatctcaaagaggccactctggcacacgtacccgggc
tcaaggccgccaccgcccacgattcagaggccagattctatctggaagccgagcacgccg
gcggcgccgcgggaagagcacaagcacgccggcacggggtggatggggcggggcagaggg
aacaacgccattgccgccgcccaggcgcagcagctcgccaccagcaccaggagcagcagc
tacgggcatggcactgccaccgacacgccacggagcagtagcagcagctacggctatagg
aaaaccggtttccatcgggtggacacgccgcgaagcaggttcgacaacgatggtgcgcag
ccacgtcgttggtag
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