Panicum virgatum (switchgrass): 120687787
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Entry
120687787 CDS
T07260
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120687787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120687787
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120687787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
120687787
NCBI-ProteinID:
XP_039825739
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All DBs
Position
9N:complement(4473091..4482038)
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AA seq
1005 aa
AA seq
DB search
MGVPAFYRWLADRYPLTVSDAEEEEPVELEPGAFVPVDLRRPNPNGFEFDNLYLDMNGII
HPCFHPEGRPAPTTYDEVFKSIFDYIDHLFGLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEERLRKEFEAEGRTLAQKEKSEAIDSNVITPGTQFMFVLSTALQYYIQ
LRLNHTLGWQSVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVISMPGQQEKCFLCGQPGHLAAECRGPSQADNSVELPPIHKKKYQF
LNIWVLREYLAKDLEIVDAPFKINFERLIDDFVFMCFFVGNDFLPHMPTLEIREGAINLL
MSIYRAEFTSMGGYLTDGGEVLLDRVEHFIQSVAVNEEQIFQKRARIQQARENYEERNKI
QKENSEENQYVDKVKLGEPGYRERYYAEKFKEEAESKPIAQVRRDVVQKYVEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLKDLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKY
YVDLMTDPNSPLRSFYPKDFEIDMNGKRFAWQGVAKLPFIDEMCLLAETRKLEETLTEEE
KFRNRTMFDIIYVRDSHPLTAQIAFLYQMYNHLPRTDPYVIPIDPAASGGMNGFLCLSER
NWYCMTVTSPVKGFNGIAQNRVLNATYLNPQYHKHIPEPPMGVIIPAKILKPSDFKPFPV
LWHEDNSRRQARDRPQVSGALSGSLLGEAAHRLVKNSLQIKSGSAAGLLDMPYRGAPYGP
GNRPRPAGPLGYETGFVDNSYHAHMSRSVPNSHPQFFGDAQANRQPMRILERPNSRSHEP
GIHASMSKLTIHEGLRPHQNNRMQNSGYWPNQPQPNHYAGPPPQRPNQPHPNHYAGPPPQ
RPMQNINFTPQRPFQTGGFPQQRPVNGVPPPLPPSNWIGKQPSGGPTGVPAKHDPRTVPD
RQPKQDNPRSQQDKRQQAAKVYRVKTQATNGNGLSESGKQEEPTA
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttctaccggtggctggcggaccgctacccgctgaccgtgtcggac
gcggaggaggaggagcccgtggagctcgagcccggcgccttcgtccccgtcgacctccgc
cgccccaaccccaacggcttcgagttcgacaacctctacctcgacatgaatggcatcatt
cacccctgcttccaccccgaaggccggccggcgcctaccacatacgacgaggtgttcaag
tcgatttttgattacatcgaccacctcttcggcctcgtccgccccaggaagctcctctac
atggcaattgatggtgttgctccaagggcgaaaatgaatcagcagaggtccaggcgattc
cgggctgccaaggacgctgctgatgcggcagccgaggaggagagactgaggaaggaattt
gaggcagagggtaggaccctagcccagaaggagaagtcagaggcaattgactcgaatgtc
attactcccgggacgcagttcatgtttgtactatctacggcgcttcagtattacatacaa
ttgagattaaatcatacccttggatggcagtctgtcaaggtaatattgtctgattccaat
gtccctggagagggagagcacaaaattatgtcatacatccgcctgcagcgcaatcttcct
ggatttgatcccaatacacgccattgcttatatggcctggatgctgatttgattatgctt
gcactggcaactcacgaggtccacttttcaattttaagagaggtgatctccatgccaggg
caacaagaaaaatgttttctgtgcggtcaacctgggcatttggctgctgaatgcagaggc
cctagccaggctgataattctgtggaactacctcctattcataaaaagaagtaccagttt
cttaacatatgggtgctgcgtgaatacctggcaaaggatttggaaattgtagatgctccc
ttcaagataaactttgaacgccttatcgatgattttgtgtttatgtgtttctttgttggc
aatgactttctgcctcacatgccaactttggaaattcgtgagggtgccattaaccttctc
atgagtatctacagggcggagttcacatcaatgggtggctacctcaccgatgggggcgag
gttctattggaccgagtggaacatttcattcagtctgttgctgtcaatgaagaacaaatt
ttccagaaacgtgcacgcattcaacaggcacgtgagaactatgaagagagaaacaaaata
cagaaggaaaattctgaggagaaccaatatgtggacaaggtcaagttgggagagccagga
tacagggagcggtactatgcagagaaatttaaagaagaggcagaatcaaaacccattgct
caagttcggagagatgttgtccagaaatatgtggaaggtctttgttgggttatgagatac
tactatcaaggtgtttgttcatggcagtggttctatccatatcattatgcgccttttgca
tctgacttaaaagacttggctgaattggagataacatttttcttgggtcaacctttcaag
ccattcgatcaactcatggggacactaccagctgcaagctccaatgcactgccaaagtac
tatgttgatttaatgactgatccaaattcacctttgaggtcattctatcccaaagatttt
gagatagacatgaacggtaaacgttttgcatggcagggtgttgcaaaattgccttttatt
gacgaaatgtgtttgcttgctgagacaagaaaactagaagagacattgacagaagaagag
aaattcaggaacaggacaatgtttgacatcatatatgttcgagactctcatccattgact
gctcagattgcgttcctgtatcaaatgtacaaccatctaccaagaacagatccttatgtt
atacccattgaccctgctgctagtggtggaatgaatgggttcctttgtttatctgaaagg
aactggtattgcatgactgtaacatctccagttaaggggttcaacggcattgcccaaaac
agagttttgaatgctacctaccttaatcctcagtatcacaagcacatcccggagccccca
atgggggtcatcatacccgcaaagatattgaaacctagtgatttcaaaccctttcctgta
ctgtggcatgaagataatagtcgccggcaagcaagagacaggcctcaggtttctggagct
ctgtcaggttctctcttaggagaagctgcgcaccgtctggtgaaaaactccctccagatc
aaatctggcagcgctgccgggctacttgatatgccttatagaggtgcaccctatggccca
ggaaacagaccaaggcctgccggaccattgggatatgagacgggttttgtggacaattca
taccatgcacacatgtccagaagtgtcccgaactctcatcctcaattctttggtgatgct
caagctaacagacagcccatgcggatactggaacgtccaaactcccgaagtcatgaacct
ggtatccatgcatcaatgtcaaaactgacaatccatgaaggtctaaggcctcatcagaat
aacaggatgcagaattctgggtactggcccaatcaaccacagcctaatcactatgctgga
cccccaccccagcggcccaatcaaccacatcctaatcactatgctggacccccaccccag
cggcccatgcagaacatcaattttacacctcagcgtcctttccaaactggaggattcccg
cagcagcgaccagtaaatggggttccaccaccattacctcccagtaactggattggcaag
caaccaagtggaggccccacgggtgtacctgcaaagcatgatccaaggacagtcccggat
aggcagccgaagcaggataacccgagatcacaacaggataagagacaacaggctgcgaag
gtataccgtgtcaaaacccaagctactaatggtaatggtctgtcagagtcaggtaaacag
gaagaacccacagcataa
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