KEGG   Panicum virgatum (switchgrass): 120690475
Entry
120690475         CDS       T07260                                 
Name
(RefSeq) NHP2-like protein 1
  KO
K12845  U4/U6 small nuclear ribonucleoprotein SNU13
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03008  Ribosome biogenesis in eukaryotes
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120690475
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    120690475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120690475
   03009 Ribosome biogenesis [BR:pvir03009]
    120690475
Spliceosome [BR:pvir03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    120690475
Ribosome biogenesis [BR:pvir03009]
 Eukaryotic type
  Sno RNPs
   Box C/D snoRNPs
    120690475
SSDB
Motif
Pfam: Ribosomal_L7Ae PELOTA_1
Other DBs
NCBI-GeneID: 120690475
NCBI-ProteinID: XP_039829062
LinkDB
Position
9N:complement(72080318..72082429)
AA seq 128 aa
MSQEAVNPKAYPLADAQLTLSILEIIQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKQPIQNLK
DSIEKLLI
NT seq 387 nt   +upstreamnt  +downstreamnt
atgagccaggaggcggtgaacccgaaggcgtacccgctggcggatgcgcagctgacgctt
agtatcctcgagatcatccagcaggccgctaactacaagcagctcaagaagggcgccaac
gaagcgacgaagaccctgaacaggggaatatcggagttcgtggtgatggcggctgacacc
gagccgctcgagatccttctccacctccccttgctagctgaggataagaacgtgccatat
gtatttgttccatcaaagcaagctcttggtcgtgcttgtggtgttacaagaccggttatt
gcttgctcagtgaccagcaatgagggtagccagctgaaacagccgattcagaatctcaag
gactctatcgagaagcttctcatctga

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