Panicum virgatum (switchgrass): 120690561
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Entry
120690561 CDS
T07260
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120690561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120690561
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120690561
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
PRIMA1
Motif
Other DBs
NCBI-GeneID:
120690561
NCBI-ProteinID:
XP_039829183
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Position
9N:complement(5414047..5418022)
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AA seq
411 aa
AA seq
DB search
MDGNARPAANQKKPIVTDDDLVELLWHNGSVVAQPQAHQRPAPSDRPGSSGLTGEETAAW
FPDTLDDALEKDLYTQLWYSSIIDAAPHHGDTLPGPSSPPPPPELAHPVTPPVGSSGVES
SWAGDICSTFYGSNQVPGMPAGVNRGKDASFQSEVPHGAGAGTSSSGGSGSNYGGSGLPS
DSGHVQKGKGICRDDSDSRSEDAECEATEEAKSSRRCGTKRRTRAAEVHNLSERRRRDRI
NEKMRALQELIPHCNKTDKASILDETIEYLKSLQMQVQIMWMTSGMAPMMFPGAHQFMSP
MALGMNSACVTQMSYMNLPLPNHIPLNSSPTMNPINSPSIANQMQNVHLREASNHFLHQG
GGQISVPQVPGTHVYGPEIPQAEQHNRILEVPASTVAATSRAGQLHTYGGA
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggacggcaatgcgaggccagcagcgaatcaaaagaagcccatcgtcacggacgacgac
ctcgtggagctgttgtggcacaacgggagcgtcgtcgcgcagccccaggcgcaccagcgg
ccggcgccctccgaccgcccgggcagcagcggcctcaccggcgaggagaccgccgcgtgg
ttcccggacaccctcgacgacgcgctggagaaggacctgtacacgcagctctggtacagt
agcatcatcgacgccgccccgcaccacggggacacgctcccgggccctagctcgccgccg
ccgccgccggagctggcgcacccggtgacgccgccggtggggagcagcggcgtcgagtcg
agctgggctggcgacatctgttcgaccttctacggcagcaaccaggtgcccgggatgccg
gcaggggtcaacaggggaaaggacgcgtcatttcagtcggaggtgccgcacggcgccggc
gccggtacatcgtcgtccggcgggtctggaagcaactatgggggatccgggctgccgagt
gacagcggccacgtccagaaagggaaggggatctgtagagacgactcggatagtcggagt
gaggatgccgagtgtgaggcaactgaggaggccaaatcatcgaggcgatgcggaacgaag
cgcaggactcgcgcagctgaagttcataatctttctgagaggagaagaagagaccggatc
aatgaaaagatgcgcgccttgcaagagctgataccgcactgcaacaagactgacaaagcg
tcgatattagatgagacaattgagtatctgaagtccctccaaatgcaagttcagatcatg
tggatgacttctgggatggcaccgatgatgtttcctggtgctcatcaattcatgtcacca
atggctctaggcatgaattcagcttgcgtcactcagatgtcatacatgaaccttcccctg
ccaaatcacatccctttgaactcatctccaactatgaatccaattaattcaccaagtatc
gcgaaccagatgcaaaatgttcatctcagggaggcaagtaatcacttccttcaccaaggt
ggcgggcaaatatcggtacctcaggtaccaggaacccatgtttatggacctgaaatacca
caagctgaacaacacaataggatactagaagtgccagctagtaccgtcgcggcaacctct
cgggcaggacaactgcatacttatggtggagcttag
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