Panicum virgatum (switchgrass): 120690886
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Entry
120690886 CDS
T07260
Name
(RefSeq) protein SIEL-like isoform X1
KO
K13141
integrator complex subunit 4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120690886
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
120690886
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GFIT
Motif
Pfam:
HEAT
HEAT_2
PDS5
HEAT_EZ
Cnd3
Cnd1
API5
IFT46_B_C
Motif
Other DBs
NCBI-GeneID:
120690886
NCBI-ProteinID:
XP_039829689
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Position
9N:68998834..69003460
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AA seq
816 aa
AA seq
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MGDPHLLSSARKHPGLIDERFSDPSPSITKRPRVAAEPPAPSDAAPYPEAEVRSLVMMAG
GIYPLARAEGLRGLAAVLEKVDAGCGVGARIAECCYECATELMRDDDEGVRLAVVRLVVL
CAQKFAARMDIDAKGLGDLMDLIFLQLSSMARDMCTKVRIEAFSALGKMQRVSEGVLLQS
LSKKVIKTDPMSGCIINGQKLPPKIKIPCAAGIFAHGIEDEFYQVRTAACTSLGALAKFS
GQYAEKALDLLMDMMNDDTEAVRLQTLKALFHMATYGYLRMEEKHMHMFLGLLVDANHLI
RNAAHKILGLVNLPKLQMFKSALDGLITSLEKNPEEQDIYGILFSIGKNHGSFSANIAKH
LAKEITMASDGELILDKPRIKALLIVSISASFSDDKHKKLDIPSIIFAHAISLLEKFSSA
LGEEVNQDSILSYLCHKGGMPFWGNRSISTEFGESESCKVETVEVGGKIENTAKAAKGLD
RVLVMQSMESILQTVEGAWTTKMTSDIFGAQTILRTCKEELKVFAENSAGSIGAFSNFLC
EYLHAIHLIVEIWQLIKLDNSYTFGLTSHDILLEKLNISIRRMEYCYAGLNRELEVQVLE
LSLLANLFGLSKIEACSKVVLSKLLWIISRLDGLCADGSCELSDFIREIKKTFDANPIGD
TMIGNIHTLFGLFRVKPARDFGMLKEISAVLQVCDNSSENPLSYICGLPVGVSFNISLWN
ISSHHRLWFRMSIGESMQHAFLEFSSFEGNEEVKNGSMVVPLDATPMAHSFVLRVCLLME
CSYGISTNQGGHGGPSDCVVQLSDELDVYFVSTGQR
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacccgcacctcctctcctccgctcgaaaacaccctggtctcatcgacgagcgc
ttctccgatcccagcccgtccatcaccaagcggcctagggttgcggcggagccgcccgcg
cccagtgacgcggctccgtaccccgaggcggaggtccggtcgctcgtcatgatggccgga
ggaatctaccctctggcacgggccgaggggctccgcggcctcgccgcggtcctcgagaag
gtggacgccggctgcggtgtcggcgcaaggattgcggagtgctgctacgaatgcgcgacg
gagctcatgagggatgacgacgagggcgtcaggttggccgtcgtgcgattggtagtccta
tgtgctcagaagtttgctgcaagaatggatatcgatgccaagggccttggtgacctcatg
gacttgattttcctacagctaagctccatggctagggacatgtgcacaaaagtgagaatt
gaagcattcagtgcccttggtaaaatgcaacgagtttctgagggtgtattacttcagtcg
ctgtctaagaaggttataaaaactgaccctatgagtggttgtatcatcaacgggcagaag
ttacctcctaagataaaaattccctgtgctgctggcatttttgcccatggaattgaagat
gagttttaccaggtgcggacagcagcttgcacatcattgggagcactggcaaagttttct
ggtcagtatgcggagaaggccttggacttgttgatggacatgatgaatgatgatacagaa
gcagttaggctgcagactttgaaagcactatttcatatggcaacatatggatatttgaga
atggaagagaagcacatgcatatgtttcttggcttgctggttgatgccaatcacttaatt
cgaaatgcagcacacaagattcttgggttagtcaacctgcccaaacttcaaatgttcaaa
tctgcacttgatggtctcattacaagtttggagaaaaatcctgaggaacaagacatatat
ggtattctgttttctattggtaagaatcatgggagcttttcagctaacatagctaaacat
ttggccaaagagatcactatggcatctgacggagagcttatcttggacaaacctaggatc
aaagcattgctaatagtatctatctcagcatctttttctgatgataagcacaagaagttg
gacataccttcaattatcttcgcacatgcaatttccctattggagaagttctcgtctgca
ctcggagaagaggttaatcaggattcaattttatcctacttgtgtcataaaggtggaatg
ccattttggggaaacagatcaatatctacagagtttggagaatcagaaagctgcaaagtt
gaaactgtggaagttggtggcaaaatagaaaatactgcaaaggcagctaagggtctagac
agagttctggtaatgcaatccatggaatccatactgcaaactgttgaaggagcctggact
acgaaaatgacaagcgatatttttggagcccaaactattttgagaacatgcaaagaagag
ttaaaagtatttgctgaaaattctgctggatcaattggtgcgttctcaaactttctatgt
gagtatcttcatgcaatacacttgattgttgaaatatggcagttgattaaattggataat
tcttatacttttggcctaacatcacatgatattttactggagaagttgaatatatccata
agaaggatggaatactgttatgctggattaaatagagaattggaggttcaagtgttggag
ctttctttgttagctaatttatttggattgtcaaagatcgaagcttgttcaaaggtagtt
ctgagtaagttgctctggattattagtcgcctagatggtctgtgcgctgatgggtcctgt
gaactgtctgacttcattagagaaattaagaaaacctttgatgccaaccctattggcgat
actatgatcggcaacattcacactttgtttggactcttccgtgtaaaaccagcaagagat
tttggaatgcttaaagagataagtgcagtattgcaagtttgtgataacagttctgagaat
ccactatcatacatttgtggattaccagtgggtgtcagttttaacatatctctgtggaac
atatctagtcatcacagattgtggttccgcatgagcattggtgagtccatgcaacatgcc
ttcttagagttttcctcttttgaaggtaatgaggaggtgaagaacggctctatggttgtt
cctcttgatgctactccaatggcgcattcattcgtcctaagggtatgtctgctaatggag
tgttcatatggtatcagcaccaaccagggaggacatggagggccgagtgattgtgttgtc
caactctctgatgaactggatgtatattttgtcagtactgggcaaaggtga
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