Panicum virgatum (switchgrass): 120691122
Help
Entry
120691122 CDS
T07260
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120691122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120691122
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120691122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
120691122
NCBI-ProteinID:
XP_039830026
LinkDB
All DBs
Position
9N:complement(15685426..15690612)
Genome browser
AA seq
508 aa
AA seq
DB search
MNQFVPDWNSMGDTSRPLGDDDDLIELLWCNGHVIMQSQNNRKLPPRPEKPAGAAAPAPA
SAAQDDEAGLWFPFALADSLDKDIFSEFFCEAPAAAAPVPATPGVEDGKPACRDVPMEDD
SRRGGACAVSEAPSDLMPPPKSGPVSGSRQQTMSLATDGGDNAGDLSDLVRAGSAGKASA
EAGASSMLSTIGSSICGSNQVLVQRAVSAAGRVACGGGCSGSALPSAMGSANANARGRGN
EATSGRSNYCFGTATTTTTEPTSTSNRSSKRKRLDTEDSESPSEDAESESAAMLARKPPQ
KLTMARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQL
QVQMMWMGSGIAAPPVMFPGVHQYLPRMGVGMGAAAMPSMPRMPFMAPQPVVPNAPVHNP
VPLSPAAYRGHMPAVGITEPYAHYLGVNHLQPTPSQHFAQGVGYYPLGAKAAVQQSPALH
HVPGGGMPAVAAAPGGLPPETAPSRGPG
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagttcgtgcctgattggaacagcatgggagacacctccaggccgctcggcgac
gacgatgaccttatcgagctgctctggtgcaacggccatgtcatcatgcagagccagaac
aaccggaagctaccgccgaggcccgagaagccggcgggggcagcagctccagcccccgcg
tcggcggcgcaagacgacgaggccggcctctggttcccgttcgcgctagccgactcgctc
gacaaggacatcttctcggagttcttctgtgaagcaccagcggcggcggctccggtgccc
gcaaccccaggcgtcgaggacggcaagcctgcctgcagggacgtcccgatggaggacgac
agcaggcgcggcggggcgtgcgcggtgtccgaggccccgagcgacctgatgccgccgccc
aagtcggggcccgtgtccgggtccaggcagcagacgatgagcctggcgacggacggcggt
gacaacgccggcgacctctcggacctcgtccgggcgggcagcgcggggaaggcgtcggcg
gaggccggcgcgtcgtcgatgctgagcacgatcgggtccagcatctgcgggagcaaccag
gtgctggtgcagcgcgcggtgagcgcggcgggccgcgtcgcttgcggcggcggctgctcc
ggcagcgcgctgccgtctgcgatgggaagcgcgaacgcgaacgccagaggcaggggcaac
gaggccacgtcggggcggtccaactactgcttcggcaccgccaccaccaccaccaccgag
ccgacgagcaccagcaaccggagcagcaagcggaagcggctcgacaccgaggactccgag
agccccagcgaggacgcggagtcggagtccgccgcgatgttggcgcgcaagccgccgcag
aagctgacgatggcgcggaggagccgcgccgccgaagtgcacaacctctccgagaggagg
agacgggacaggatcaacgagaagatgagagccctgcaagagctgatacctcactgcaac
aagaccgacaaggcgtcgatgctggacgaggccatcgagtacctcaagtcgctgcagctg
caggtgcagatgatgtggatgggcagcggcatcgcggcgccgccggtgatgttccccggc
gtgcaccagtacctgccgcggatgggcgtcgggatgggcgccgcggcgatgccgtccatg
ccgcggatgccgttcatggcgccgcagccggtggtgcccaacgcgcccgtccacaacccc
gtgccgctctcgccggcggcctaccgggggcacatgccggcggtgggcatcaccgagccc
tacgcgcactacctcggcgtcaaccacctgcagccgacgccgtctcagcatttcgcgcag
ggcgtgggatactacccgctgggggcgaaggccgccgtgcagcagagtccggcgctccac
cacgtgcccggtggcggcatgcccgccgtcgccgccgcgccgggggggctgccgcctgaa
accgctccgagcagaggaccaggatga
DBGET
integrated database retrieval system
