Panicum virgatum (switchgrass): 120691775
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Entry
120691775 CDS
T07260
Name
(RefSeq) ABC transporter I family member 20-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120691775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120691775
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120691775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
Arf
AAA_29
AAA
ORC-CDC6-like
nSTAND3
ATP-synt_ab
AAA_23
AAA_24
AAA_28
AAA_15
Motif
Other DBs
NCBI-GeneID:
120691775
NCBI-ProteinID:
XP_039830901
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Position
9N:complement(66320152..66322804)
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AA seq
323 aa
AA seq
DB search
MAPTVEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGQRCLLLGSNGAGKTTILKILG
GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF
GVAGVDPKRRDELIKILDIDLAWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDV
LARSNLLTYLKQECDERGATIIYATHIFDGLDDWPTHVVYIAHGKLQLALPLEKVKEMSQ
LSLMRTVESWLRKERDEDRRRRKERKEKGLPEFDKVVEGSQVIGDPAKSAARVVNNGWAA
GRLTSTIAGEENFVFSSNSVLRQ
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacggtggagatcagccacctttcgttcacctaccctggtatcgacggccgc
ccgccgcccggcgcgccgccgcttatcgaggacgtctgcttctccctcgacgccggccaa
cgatgcctcctcctcggctccaacggcgcaggcaagacgacgatactgaagatactgggc
gggaagcacatggtggatccgagcatggtgcgggtcctgggcaggtccgccttccacgac
acggcgctcacctcctccggcgacctctgctacctcggcggcgagtggagacgcgacgtg
gcctttgccggctaccaggtgaatattcagatggatatatcggcagagaagatgattttt
ggtgttgctggtgttgatccaaagaggagagatgagcttatcaagatattagacattgac
cttgcttggcgcatgcacaaggcatcagatggtcagaggagacgagtccagatttgcatg
ggacttcttaagccattcaaggttctcctccttgatgagatcacagttgacctggatgtg
ttggcaagatcaaatctgttgacatatcttaagcaggaatgtgatgaaagaggtgcaaca
atcatctatgccacacatatttttgatggtcttgatgattggccaacacacgttgtttac
attgctcatgggaagctgcaattagcactgcctttggaaaaagtgaaagaaatgagccag
ttgtctcttatgagaactgtggagagttggttgaggaaagaaagagacgaggacaggagg
aggagaaaggagcgaaaggagaaaggcctcccggaattcgacaaggttgttgagggtagc
caggttataggcgatccagcaaagagcgctgccagagtcgtaaacaatgggtgggcagca
ggacggctcacctcaacgatcgcaggagaggagaacttcgttttcagctctaacagcgtt
cttaggcaatga
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