Panicum virgatum (switchgrass): 120696644
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Entry
120696644 CDS
T07260
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120696644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120696644
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120696644
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
120696644
NCBI-ProteinID:
XP_039835547
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All DBs
Position
3K:1520430..1525325
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AA seq
693 aa
AA seq
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MGIPSFYKWLVTKYPSIVSSAKEEPEGSPDGVIYDNLYLDINCIIHHCFHPQDSMHADID
VCPPTTVTEVLESIFEYLDRLFRIVRPRRLLYLAVDGVAPCAKMNRMRRGRFHSAWLARD
EALEEEEMRRELRARPCFHLQALEEEEMRRELRAQGKEVPPPEISEVSDPNVITPGTEFM
EKLSQALQYYIRARLNTDPGWKDIMVILSDANVPGEGEHKIMSFIRAQRSMEGXVYDPNT
RHCLYGNDADLIMLALASHEVHFSILREDVPLPNQAETEGKPNKPYQFLNIWVLREYLEI
ELKILDPVCEPDIERLIDDFIFICFLMGNDFIPHIPSLETHECAVDLLIEVYKTTFNKMG
GYIVNTDKVKDKHGSYLEISRLEIFFHELSLYEEKNFLKRYELRKDLLKKVYREMLCEAS
ESERPELRRKLDGYLEDHPYDRIRRLGLPGWKSWFHREYFGLKTSNEIVNLQNDMAQKYL
EGLCWVFQCYFADVPSWSWYYPFYIAPFVSDLKGLSRFQISFALDKPLRPFDQLMAVLPS
RSWLNLPYCYCCKFMGGEEYCPNLQTDMNGRRFLWTGISEERLLASTKAADEELTMDEMR
RNTTRQDKIFLHRNSNATGHAHINRVIIQTSYCPLQKLPIDSATSGIGGWLSSDDNAGGL
SNSLFPSPIKNLQDITNDQAISATFFNSSTLRQ
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggggattccttctttctacaagtggcttgtgaccaaatacccaagcatcgtctcctcc
gcaaaggaggaaccagaggggagccctgatggcgtcatctatgacaacctctacctcgac
ataaattgcatcatccaccattgcttccacccgcaagacagcatgcatgcagacatagat
gtgtgccctccgacgacggtcaccgaggtcttggagtccattttcgagtacttggatcgc
ctgttccgcatcgtcaggccgagaaggctcctctacttggcagtagatggcgttgctcct
tgcgccaaaatgaaccgaatgcgacggggacgtttccactctgcttggctagcaagggat
gaggcgcttgaagaggaagagatgcggagggaattaagagctcgaccatgcttccattta
caggcgcttgaagaggaagagatgcggagggaattaagagctcaagggaaggaggtgcca
ccgccagagatttcagaggtttctgaccccaatgtcatcacaccagggactgaattcatg
gagaagctatcacaagcgctccaatactacatccgtgccagactgaatactgacccgggg
tggaaagacataatggtcatactctctgatgcaaatgttcccggagaaggagagcacaag
atcatgtctttcatccgtgcacaacgcagcatggaaggctgagtctatgaccccaacact
cgacactgcttgtatgggaatgatgcagatctgataatgcttgctttggcatctcatgag
gtccacttctctattttgcgtgaggatgtgccactcccaaatcaggcagaaacagaaggg
aaaccaaataaaccttatcagtttttgaacatatgggttctgagagagtacttggaaatt
gaattgaagatactggacccagtttgcgagcctgacattgagaggctaatagatgacttc
atctttatttgtttcttgatgggaaatgatttcattccacatattccatcacttgagaca
catgagtgtgcggtcgatcttctcattgaagtgtacaaaacaaccttcaacaagatggga
gggtatattgtgaacacagataaagtcaaagataagcatggttcatatctagaaatctca
aggttggaaatattttttcatgaactgtccttgtatgaagagaaaaattttctcaaaaga
tatgagctgagaaaggatttgttgaagaaggtatatcgtgaaatgttgtgtgaagcttca
gaaagtgaaagaccagagctgaggcgaaaactagatggctaccttgaagaccacccgtac
gacagaataagaagactgggattaccaggatggaaatcctggttccacagggaatatttt
ggcctcaaaacttccaatgaaattgtaaacctgcagaacgacatggctcagaagtattta
gaaggactttgctgggtgtttcaatgctattttgcggatgtaccatcatggagctggtac
tacccattctatattgctcctttcgtatctgatctcaaaggtctttctcggtttcagata
tctttcgctttggacaaaccactgcgtccatttgatcagctcatggcagttttgccttca
cgaagctggcttaacctcccatactgttactgctgcaaatttatgggaggtgaagaatac
tgtccgaatttgcagactgacatgaatgggagacgtttcttgtggactggtatctctgag
gaacggctgcttgcgagcaccaaagcggcagacgaagagctgacgatggatgagatgaga
aggaatactactcggcaagacaagatctttctgcacaggaactcaaacgctacaggacat
gcacatattaacagagttattatacagacatcatactgtccactgcagaagcttccgata
gattcagctacgagtggaattggagggtggttgtcatctgatgacaatgctggtgggctg
agcaacagtttgtttccctctcccatcaaaaatctgcaggacatcacaaatgatcaggca
atatcagccacgttcttcaacagttcaaccctgaggcagtga
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