KEGG   Panicum virgatum (switchgrass): 120698562
Entry
120698562         CDS       T07260                                 
Name
(RefSeq) sm-like protein LSM3B
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03018  RNA degradation
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120698562
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120698562
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120698562
   03041 Spliceosome [BR:pvir03041]
    120698562
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120698562
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     120698562
Spliceosome [BR:pvir03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    120698562
 Complex C
  U2 snRNP components
    120698562
SSDB
Motif
Pfam: LSM RimP_C TIG_SUH Glutaredoxin
Other DBs
NCBI-GeneID: 120698562
NCBI-ProteinID: XP_039838177
LinkDB
Position
3K:complement(24524949..24528327)
AA seq 97 aa
MAAEEDMTVKEPLDLIRLSLDERIYVKLRSERELRGKLHAYDQHLNMILGDVEETVTTVE
IDDETYEEIVRTSKRTIPFLFVRGDGVILVSPPLRTV
NT seq 294 nt   +upstreamnt  +downstreamnt
atggcggcggaggaggacatgacggtgaaggagccgttggatctgatacggctcagcctc
gacgagcgcatctacgtcaagctccgctccgagcgcgagctccgcggcaagctccatgca
tatgatcagcatctcaatatgatacttggagatgttgaagagacagtgactactgtagaa
attgatgatgagacttatgaggagatcgttcgcacgagcaaacgcactatccccttcctt
tttgtccgaggagatggtgtgatactggtttctccgcccttgcggaccgtttga

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