Panicum virgatum (switchgrass): 120698562
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Entry
120698562 CDS
T07260
Name
(RefSeq) sm-like protein LSM3B
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120698562
09123 Folding, sorting and degradation
03018 RNA degradation
120698562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120698562
03041 Spliceosome [BR:
pvir03041
]
120698562
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120698562
mRNA degradation factors
5'-3' decay
Lsm complex
120698562
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120698562
Complex C
U2 snRNP components
120698562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
120698562
NCBI-ProteinID:
XP_039838177
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Position
3K:complement(24524949..24528327)
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AA seq
97 aa
AA seq
DB search
MAAEEDMTVKEPLDLIRLSLDERIYVKLRSERELRGKLHAYDQHLNMILGDVEETVTTVE
IDDETYEEIVRTSKRTIPFLFVRGDGVILVSPPLRTV
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaggaggacatgacggtgaaggagccgttggatctgatacggctcagcctc
gacgagcgcatctacgtcaagctccgctccgagcgcgagctccgcggcaagctccatgca
tatgatcagcatctcaatatgatacttggagatgttgaagagacagtgactactgtagaa
attgatgatgagacttatgaggagatcgttcgcacgagcaaacgcactatccccttcctt
tttgtccgaggagatggtgtgatactggtttctccgcccttgcggaccgtttga
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