Panicum virgatum (switchgrass): 120698983
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Entry
120698983 CDS
T07260
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120698983
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120698983
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120698983
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120698983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
AKNA
Motif
Other DBs
NCBI-GeneID:
120698983
NCBI-ProteinID:
XP_039838736
LinkDB
All DBs
Position
1K:complement(20157779..20191426)
Genome browser
AA seq
1600 aa
AA seq
DB search
MMAEASRGAKRKALVQYLDGIEEEDAPTMYRFQVLLPNAVSISLTLNNPGEEMPVRDLLR
SVKRELNSAPVGGGKVREIHWDGNIFLTDILDQKITDKIKLSNFDTKSTNILRLQDEKGG
FVGTFENMWDLTPQTDLVQELPAEYSTESALVDLTDNALQAVWSNGTGERKLIRITVDKE
KIMIFDTGRGMDGSDQNSISKWGTLGSSNHRVFRQKGIGGKAPYLLPFFGMFGYGGTIAS
MHLGGIAIVNSKTKESGKVFTLHLSRDALLKKTLSKNSKPTWKTAGGVRDPSEEEMTLSP
HKSFTQVEIYGLKKHLEVDRLLGFLKDIYFPYIQCDDDTQSMNTRNPVEFEVNDVNLAEV
QEGEVTVTNMHSSNGPDFIFHLKFTEIKSASCQAHARLKCVYFPIIKGKESIDSILEKLR
NDGYEMKENFENFSRVSIRRLGRLLPDARWGPLPFMEAKHRKGHKAEFFRRCCKRVKCFV
ETDAGFSPTLSKTDLAQHNHFTKALRNWGSKYFNNTSAEVEVEACDKDEKLLSYNQLEKQ
YYDWIKEMHDKYDVEMDGGDDEPTLIINPKCKERLGISNDVEVIRVHRSITRKGKTWRRG
DHLKILPGATGRMKNTFYSLKTSLCTTLEYIVVEGLQGDICGEARLICRPIDYSAEQGCW
LDEAGCTSPNIYIQESVSFPVSIIDNRMYKIMDDDSWNQMLKKRKEKAPAWIELISNSEV
DALGLRGDLPYEGDVMAGYRPPHEIVAVLRPGNYTPSSTGLLEQKYIVKDELEMVMEVKQ
LSRSKDCPAKLVDKKVKKTSLHNDIHGLYVFPLREASWIFKKSGVYQFNFSVSCRDTSVI
QKQTTITVCPDLNSRRCLFTGSSTNSDPVNIRLGCPVICLAVKSVDQYGNEIPFLDTSGI
TITLFDGDDVLAHVDDVEVELASDSLTMNVKDFLFKTSKLDILRPKYEAKLKLSSFDNKL
SGIWPCKVKPGLPSTVVMDMSLFLEENLTPGRVIDNFLLEVFDQFSNHVEEGTILDIHVD
GLCFLDKKISVQKVNGEGFIDLRGALRVLGGFGSEACISIFHNGKKIFLQIFQIAIRELK
AVNVPESCPAGSFLDIIFEVSDSNGLIDESIDGPLHTLNITSNELPLAEGARYAIKHGRC
VVSHVQLPREQGNVTIVACHTHYPDLQITIQLQVQPFDLVLTSFEDGPEPILRDPILSTD
SSNLLIPFQVAPAQPSHLVTYVKDVIKKTESKVGDTFSEIESTKKRLVTLYSRKDSLEEE
IDTLKGEVGSMVGYFIDAKELIRHKIREKPGTAAFVLCSSECFMDDFVGIVALLGTVPNS
KIGKMLAVYLGKDDMLSVVCKTMDAANCIEKYNTDGDVDVGFGIHHEAAALGVPIKSRFS
TICLDDIEPFKGGLMRNSPQKELNLTWPFPHVNGPKGFKGFAVNMINLSDENLNITTKGG
HGLRETLFYSLFGELQVYETRDDMFRAKDYLNGGAISLDGGIIKGKGKLLLGYSDPKITF
PVVSGLMETPGELKGHQDAVTKTRKLDDKVKLLEARKLDDKVKLLEAIKTEISKQEIVYE
ELLEKFNKRKRKFDEISDKITQPYGNEHVLTPVKAELLDL
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagaggcaagcagaggagccaagagaaaggctttagtacaatatttggatgga
atcgaggaagaagatgctccaacaatgtaccggtttcaggtcctgttgccaaatgctgtg
agcatcagcctcacgctgaacaaccctggcgaggagatgccggttcgtgatctcttgcgt
agtgtcaagagggagttgaacagtgcccctgtgggaggtggaaaggtacgggagatacac
tgggatggcaatatatttctaacggacatccttgaccagaagattacagacaaaatcaag
ttgagcaactttgacaccaagagtacaaacatattaagactccaggatgaaaaaggagga
tttgtcggtacatttgagaatatgtgggaccttacccctcaaactgatctggttcaagag
cttccggcagaatatagcactgagagtgctcttgttgaccttactgataatgcactgcaa
gctgtgtggtcaaatggtacaggagaaaggaagttgatcaggataactgttgacaaagaa
aagattatgatttttgacactggtaggggaatggatggttcggatcagaactctatctct
aaatggggtacattgggttcttctaaccatagagtatttcggcagaaaggtattggtggg
aaagcaccatatctattgcccttctttgggatgtttggttacggtggaactattgcttca
atgcatcttggaggaattgctattgttaactctaaaactaaggaatctggaaaagtgttt
accttacacctatcaagggacgccttgctgaaaaaaacattatctaagaattccaaaccc
acttggaagactgctggaggagtaagggatccatctgaagaggagatgacgttgtcacca
cacaagagttttacccaggtggagatttatgggttgaaaaaacatctggaagtagacaga
cttcttggttttttgaaggacatctatttcccatatatccagtgtgatgatgatactcaa
tcaatgaatacaagaaacccagttgaattcgaggtgaatgatgtaaatttagctgaggta
caagagggtgaagtcacagtaactaatatgcactcttcaaatggtcctgattttattttt
cacctaaagtttacagaaatcaaatcagcttcttgtcaagcccatgcgcggttgaagtgt
gtctactttccaattataaagggaaaagaatctatagattctatcttggaaaagttaagg
aatgatggctatgaaatgaaagagaacttcgagaacttctctcgtgtatcaattcgtcga
cttgggcgtttacttcccgacgctagatggggtcctcttccattcatggaagcaaaacac
agaaaaggccacaaggctgaattctttaggcgatgctgcaagagggtaaaatgctttgta
gaaacagatgcagggttctctccaacactttcaaagactgatttagcacaacataatcat
tttacgaaggcacttcgtaattggggtagcaaatattttaacaatacctcagctgaggtt
gaagttgaagcttgtgacaaggacgaaaaattactaagttataatcagctggagaaacaa
tactatgattggatcaaggaaatgcatgacaagtacgatgtggaaatggatggtggggat
gatgaacccacccttattatcaatccaaagtgcaaggaacgacttggaatatccaatgat
gttgaagtcattagagttcatagatcaattaccagaaaagggaagacttggaggagagga
gatcatctgaaaattcttcctggagcaactggacgtatgaaaaatacattctattcattg
aaaacttctttgtgtaccactttggagtacattgttgttgaaggtcttcaaggagatatt
tgtggtgaagcccgccttatatgcaggcctatcgattactctgctgagcaaggatgctgg
ctcgatgaagccggctgcacgagtccaaatatatatatccaagaatcagtctcgtttccc
gtcagcataatagataatagaatgtacaaaattatggatgatgattcttggaatcaaatg
ctgaaaaagagaaaggagaaggctcctgcatggattgaactcatcagtaattctgaagtt
gatgctcttggactaagaggggatctaccatatgaaggtgatgtaatggctggttatcga
cctccacatgaaattgtagctgttttacgaccaggaaattatacgcctagctccactggt
cttcttgagcagaagtatattgtgaaggatgagctggagatggtaatggaggttaaacag
ttgtccagaagtaaagactgtcctgcaaaacttgttgataaaaaggtgaagaaaacctca
ttgcataatgacatacatggactgtacgtatttccattgagagaagcttcgtggatattt
aaaaaatctggagtttaccagtttaatttctctgtgagttgcagagatacaagtgtcatt
cagaaacagacaactataacagtctgtcctgacttgaactctaggcgttgtcttttcact
ggctcttccactaatagtgatcctgtgaatataaggcttggatgtccagttatatgcctt
gctgttaaaagtgttgatcaatatggaaatgaaattcctttccttgatacatctggcatt
actataactttgttcgatggtgatgatgtccttgcgcatgttgatgacgttgaagtggaa
ctcgcatcagattcattaacgatgaacgtcaaagattttttgtttaaaaccagcaagtta
gacatactacggccaaagtatgaggcgaagttgaagctatcttcatttgataataagttg
tctggtatatggccatgtaaagttaaaccaggccttccatcaactgttgttatggacatg
tccctcttcttggaagagaatttaactcctggaagagtgatcgataatttccttcttgag
gtgttcgatcaatttagcaatcatgttgaagaaggaaccatacttgatatccatgttgat
ggactctgttttctagacaaaaaaatctctgttcagaaggtcaatggtgaggggtttatt
gacctacgtggagcactaagagtcttgggtggctttggttcagaagcttgtatatcaatt
tttcacaatgggaagaagattttcttacaaatatttcaaatagccataagagagttaaag
gcagtaaatgttcctgaaagttgtccggctggatcctttctggacataatatttgaagtt
tctgatagcaacggtctaattgatgaatccatagatggaccccttcatacactcaacatc
acatcgaatgagttaccactagcggaaggagcacgatatgccattaaacatggaaggtgt
gtagtttctcatgtgcagcttcctcgtgaacaaggaaatgtcactattgtggcatgtcac
acacattatcctgatttgcaaataacgattcagcttcaagttcaacctttcgatttagta
ttgaccagctttgaggatggacctgaacctatattgagagatccaattttatccactgac
agttcaaatcttttaattccctttcaagttgctcctgctcaacctagtcatcttgtcaca
tatgtaaaagatgttattaagaaaaccgaaagtaaagttggagataccttttcagagata
gagtctacaaaaaagagacttgtaactctttattctcgcaaggactcactggaggaggaa
attgacaccctaaaaggtgaggtcgggtctatggttggttatttcattgatgcaaaggag
ttaattcgtcataaaattagagaaaaacctggtactgctgcttttgttctatgctctagt
gaatgtttcatggatgattttgtcggtattgttgccctacttggaactgttccaaacagc
aaaattggcaagatgcttgctgtatatcttggcaaagatgacatgctttcagtagtttgc
aagacaatggatgctgctaattgcattgagaaatacaacactgatggagatgtggatgtt
ggctttggcattcatcatgaagcagctgctctaggagttcccataaagagtagattttct
accatttgcctggatgatatagagcccttcaaaggaggtcttatgcggaacagtccacaa
aaggaattaaacctgacgtggccgtttccacatgttaatggacctaagggattcaaagga
tttgctgtcaatatgataaatctttctgacgagaacttgaacataacaacaaaaggtgga
catggactccgtgaaactttattttatagtctctttggagagcttcaagtttatgaaacc
cgagatgatatgttccgagccaaggactatttgaacggtggagcaatatcattggatggt
ggcattattaaaggaaaaggaaaacttcttcttggttacagtgatccaaagataacattt
cctgttgtctccggcttgatggaaactccgggtgagttaaaaggtcatcaggatgctgtc
acgaagacaagaaagctggatgacaaagtgaagcttttggaagcaagaaagctggatgac
aaagtgaagcttttggaagcaatcaaaaccgaaataagcaaacaagaaatagtttatgag
gaactgttggagaagttcaacaagaggaagcgcaagtttgacgagatatcagataaaata
acccaaccttatgggaacgagcatgttctaaccccggtgaaagcggaactacttgatctg
taa
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