Panicum virgatum (switchgrass): 120700099
Help
Entry
120700099 CDS
T07260
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120700099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120700099
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120700099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
120700099
NCBI-ProteinID:
XP_039840208
LinkDB
All DBs
Position
3K:61533413..61536914
Genome browser
AA seq
457 aa
AA seq
DB search
MTQYVPDWSSGMGDAFATFNGGDDDGLMELLWCNGHVVMQSQAPRKPARPEKVAAPAAAA
AAALDDEAAAWFQYPAEDALERDLFTELFGEAPAAGAGGSGRACKEEAGCAGEAAARRSG
TMMPPQPRKKACPGDIGDVSDGAAARAAAAGGERAATATEAVESSMLTVGPSFCGSNHVQ
APRAPPPPGAAGKAGGRACDAATVTSSSMRPRSCTTRAGQAGAAAHRSSKRRPSDATETE
DAEFQSADATCELPAQKLTTAKRRRAAEVHNLSERRRRDRINEKMKTLQELIPHCNKTDK
ASMLDEAIEYLKTLQLQLQMMWMGGGMAAAAAPVMFPAGVHQYMQRMVASPHVASMPRMP
FLAPPAVQSPPGADPYAHYLAVDHLQPPPAAAAAPMHYLQGMGFYQQQQSPALPPPPPPA
VPATSLPAATARTSPPDGTLHKKYENCGKTEIQGITS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgacccagtacgtccctgattggagcagcggcatgggggacgccttcgcgacattcaac
ggcggcgacgacgacgggctcatggagctgctctggtgcaacggccacgtggtcatgcag
agccaggcgccgaggaagccggcgaggcccgagaaggttgcggcgcccgcggcggcggcg
gcggcggcgctggacgacgaggcggcggcgtggttccagtacccggcggaggacgcgctc
gagagggacctcttcacggagctcttcggggaggcgccggcggccggcgccggcggcagc
ggcagggcgtgcaaggaggaggcggggtgcgcgggcgaggccgcggcccgccggagcggg
acgatgatgccgccgcagccgcggaagaaggcgtgcccgggggacatcggcgacgtctcg
gacggcgccgcggcgcgggcggccgccgccggcggcgagcgcgcagcgaccgcgacggag
gccgtcgagtcgtccatgctgacggtcgggccgagcttctgcgggagcaaccacgtgcag
gcgccgcgcgccccgccgccgccgggggccgcggggaaggccggcggcagggcctgcgac
gcggcgacggtgacctcgtcgtcgatgcggccgaggtcctgcaccaccagggccgggcag
gcaggcgccgccgcccaccggagcagcaagcggaggccgagcgacgccacggagaccgag
gacgcggagttccagtccgccgacgcaacgtgcgagctgccggcgcagaagctgacgacg
gccaagcggcggcgcgccgccgaagtccacaacctctcggagcggagacgaagggacagg
atcaacgagaagatgaagaccctgcaggagctcattcctcactgcaacaaaacggacaag
gcgtcgatgctggacgaggcgatcgagtacctcaagacgctgcagctccagctgcagatg
atgtggatgggcggcgggatggcggcggcggcggcgccggtgatgttcccggcgggggtg
caccagtacatgcagcggatggtggcctctcctcacgtggcgtccatgcccaggatgccg
ttcttggcgccgccggccgtgcagagcccgccgggggccgacccctacgcccactacctc
gccgtcgaccacctgcagccgccgccggcggcggcggcggcccccatgcattacctgcag
gggatgggcttctaccagcagcagcagagcccggcgctgccgccaccaccgccgcccgcc
gtgccggccaccagcctgcctgcggcgactgcacggacgtcgcctcccgatggcaccctg
cacaaaaaatacgaaaactgtggcaagactgagatccagggtatcaccagctga
DBGET
integrated database retrieval system
