Panicum virgatum (switchgrass): 120704927
Help
Entry
120704927 CDS
T07260
Name
(RefSeq) probable 4-coumarate--CoA ligase 4
KO
K01904
4-coumarate--CoA ligase [EC:
6.2.1.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00130
Ubiquinone and other terpenoid-quinone biosynthesis
pvir00940
Phenylpropanoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00039
Monolignol biosynthesis, phenylalanine/tyrosine => monolignol
pvir_M00137
Flavanone biosynthesis, phenylalanine => naringenin
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
120704927
09110 Biosynthesis of other secondary metabolites
00940 Phenylpropanoid biosynthesis
120704927
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.12 4-coumarate---CoA ligase
120704927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
DRTGG
Motif
Other DBs
NCBI-GeneID:
120704927
NCBI-ProteinID:
XP_039845398
LinkDB
All DBs
Position
4K:complement(42160103..42168413)
Genome browser
AA seq
552 aa
AA seq
DB search
MGSVPEDAAAAVFRSKLPDIEIPRGLSLQAYCFERLPEVSSRPCLIDGQTGAVHTYADVE
LLSRRAAAALRALGVGRGGVVMSLLRNCPEFAFVFLGAARLGASTTTANPFYTPHEIHRQ
AAAAGAAVIVTEACAVDKVRAFAAERGVPVVSVDGAPGGGCPLLRDLMDAAEPLAADEDV
DPDDVVALPYSSGTTGMPKGVMLTHRSLVTSVAQQVDGENPNLYFRQDDVVLCVLPLFHI
YSLNSVLLAGLRAGCAIVIMRKFEVGALVELVRAHGITIAPFVPPIVVEIAKSPRVAAAD
LASIRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCLAFAKEPFEVKSG
SCGTVVRNAELKIVDPDTGASLGRNQPGEICIRGEQIMKGYLNDPEATKNTIDKDGWLHT
GDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDELAGEV
PVAFIIRTEDSQISEDEIKQFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLRARLAA
GIPSGDSTQSKN
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggggtccgtcccggaggacgccgcggcggccgtgttccgctccaagctgccggacatc
gagatcccgcgcggcctctcgctgcaggcctactgcttcgagcggctccccgaggtgtcc
tcccgcccgtgcctcatcgacgggcagacgggcgccgtccacacctacgccgacgtggag
ctcctctcgcggcgcgcggcggcggcgctccgcgcgctcggggtgggcaggggcggcgtg
gtcatgagcctgctccgcaactgccccgagttcgccttcgtcttccttggcgccgcgcgg
ctgggcgcgtccaccaccacggccaacccgttctacaccccgcacgagatccaccgccag
gcggccgcggcgggggcggcggtcatcgtcaccgaggcctgcgccgtcgacaaggtgcgc
gccttcgccgccgagcgcggcgtgcccgtggtgtccgtcgacggcgcccccgggggtggc
tgccccctgctccgggacctcatggacgccgccgagccgctcgccgccgacgaggacgtc
gaccccgacgacgtcgtcgcgctgccatactcctccggcaccaccgggatgcccaagggc
gtcatgctcacgcaccgcagcctcgtcaccagcgtcgcgcagcaggtggacggcgagaac
ccaaacctgtacttcaggcaggacgacgtggtgctctgcgtgctgccgctgttccacatc
tactcgctcaactcggtgctgctggcggggctccgcgccgggtgcgccatcgtgatcatg
cgcaagttcgaggtcggcgcgctggtggagctggtgcgcgcgcacggcatcaccatcgcg
cccttcgtgccgcccatcgtggtggagatcgccaagagcccccgcgtcgccgccgccgac
ctcgcctccatccgcatggtcatgtccggcgccgcgcccatgggcaaggacctccaggac
gccttcatggccaagatccccaacgccgtgctcggccaggggtacgggatgacggaggca
gggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggtcaagtccggc
tcctgcggcacggtggtcaggaacgccgagctgaagatcgtcgaccccgacaccggcgcg
tcgctgggccggaaccagccgggcgagatctgcatccgcggcgagcaaatcatgaaaggt
tatctgaatgatccagaagccacaaagaataccattgataaggatggatggctgcacaca
ggcgacattggttatgttgatgacgacgatgagatcttcattgttgacaggctcaaggag
ataatcaaatacaagggcttccaagtacctcctgcagaacttgaggcccttctcatcaca
catcctgaaattaaggatgctgctgttgtctcaatgaaagatgaacttgccggtgaagtc
cccgttgcattcattatacggactgaagattctcagatcagtgaggacgagatcaagcag
tttgttgcaaaggaggttgtattctacaagaggatcaataaagttttcttcacggattcc
attccgaagaatccttctggcaaaatccttaggaaggacctgagagcacgacttgctgca
ggaattcctagcggtgacagcacccagtccaaaaactaa
DBGET
integrated database retrieval system
