Panicum virgatum (switchgrass): 120706604
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Entry
120706604 CDS
T07260
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120706604
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120706604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120706604
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120706604
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
120706604
NCBI-ProteinID:
XP_039847215
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Position
5K:complement(15598400..15607481)
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AA seq
619 aa
AA seq
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MCVGCRSDGNDFAELLWENGQAVVHGRRKQPPQTSFPPFTCGAASSSRAQEKQPGGDPVA
LLKTGGVFGAGGLAPSLHDFSSGLDATRDNGDLDDTVPWIHYPIIEEDAAEPALADSYSP
DFFSELYAAAAAATNLGSLPPPVQHTTNNRSNPVTTTGSEPEPSKESHRFQIPGPSTRPE
PQAEFAATKQPRLGGGGEGLMNFSLFSRPAAMARASLQNAQRPPQTGTDKASNVTTSTRV
ESTVLQSASGPRTAPVFTEQRTAWSQQPKEVRFSCTAAPTAGNLQQEMPRDRLGSITLQK
KVETRKAPEAAVATSSVCSGNGAGTGNDESWRQHKRKSQAECSASQDDDLEDESGGMRRS
GSRGTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQL
QVQMMSMGSGLCIPPMLLPPTMQHLQIPPIAHFPHLGMGLGYGMGVFDMNSTPGVPFPSM
PGAHFPCPMIPGTPPQGLGMPGRNTVPMFGLPGQGIHPSASSVQPFQYLAGIPVRPNLPP
QFSAAMANMVQQQDVATQQQQNMNNEARRGTNTGDPELQTILQVENQHFSVPSVQTESGQ
FLDSGSNRTDTAERNGPET
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgtgggatgcaggtccgacggcaacgactttgcagagctgctgtgggagaacggg
caggcggtggtccacggccggaggaagcagccgccccagacctcgttcccgcccttcacc
tgcggcgctgccagcagcagccgggctcaagaaaagcagccgggcggtgaccccgtggcg
ctgttgaagacaggaggtgtcttcggcgccggcggcttggccccatcgcttcacgacttc
tcctccggcctagacgccacccgtgacaacggtgatcttgatgacaccgtgccctggatc
cactaccccatcatcgaggaagacgccgccgagcctgcccttgcggacagctacagcccg
gatttcttctcggagctctatgcagcggcggcggcggcgacgaacctcgggtctctgcca
ccacctgtccagcacaccaccaacaacaggagtaacccggtcaccaccaccggcagtgaa
ccagaaccctcaaaggaaagccaccgcttccagattccaggtccatccaccaggcctgaa
ccacaagccgagttcgcggccaccaagcagcctcggctgggcggcggcggagagggcctg
atgaacttctccctcttctctaggccggcagccatggcgcgagcaagcctgcagaacgcg
cagaggcccccacaaacaggcacggacaaggcttccaatgtcaccacgagcacccgcgtg
gagtcgacggtcctccagtcggccagcgggccaagaactgcccctgtgttcacggagcag
aggacggcgtggtcacaacaacccaaggaggtgcggttctcgtgcacggcagctccgaca
gctggtaacctgcagcaagagatgccccgggacagacttggcagcattactctgcagaaa
aaagttgagaccaggaaggcgcctgaggccgcagtcgcaacttcgtcggtctgctccggc
aatggcgctggaacaggaaatgacgagtcctggcgccaacacaagaggaagagtcaagcc
gagtgttctgctagccaagatgatgatcttgaagatgagtccggtggcatgagaagatct
ggcagcagaggcacgaagcgcagtcgcaccgccgaggtgcacaatttgtcagaaaggagg
agaagagacaggatcaacgagaaaatgcgcgccttgcaagaactcatccccaactgcaac
aagattgacaaagcttcaatgctcgacgaagcgattgagtacctcaaaacccttcagctt
caagttcagatgatgtccatgggaagtgggctgtgcattcctccaatgctgctgccacca
accatgcagcacttgcaaatccctccaatcgctcatttccctcatcttggcatgggtttg
gggtatgggatgggtgtgttcgacatgaacagcaccccaggggttccatttccgtccatg
cctggtgctcactttccttgcccaatgatcccaggcacgccaccacaaggtcttggaatg
cctggcagaaacacagtaccaatgtttggacttcccggtcaaggaatacatccatcagca
tctagtgtacagccatttcaatatttggctgggattcctgttaggccaaacctgccccct
caattctcagcagccatggctaacatggtgcagcagcaagacgtagcaactcaacagcag
cagaatatgaataatgaagctagacggggaacaaatacaggagatccagaattacagacg
atcctgcaggttgagaaccagcattttagtgtaccctcagtacaaacagaaagtggtcag
tttttggatagtggcagcaacaggactgatactgcagagagaaatgggcctgaaacataa
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