Panicum virgatum (switchgrass): 120707193
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Entry
120707193 CDS
T07260
Name
(RefSeq) lycopene epsilon cyclase, chloroplastic-like
KO
K06444
lycopene epsilon-cyclase [EC:
5.5.1.18
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120707193
Enzymes [BR:
pvir01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.18 lycopene epsilon-cyclase
120707193
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Motif
Pfam:
Lycopene_cycl
DAO
Pyr_redox_2
HI0933_like
Thi4
GIDA
FAD_binding_2
Pyr_redox_3
FAD_binding_3
Motif
Other DBs
NCBI-GeneID:
120707193
NCBI-ProteinID:
XP_039847965
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Position
5K:36233302..36237418
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AA seq
537 aa
AA seq
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MGLTGAAISAPLGCRGLPRGAVGGGGDKARRAGAERWRRAGAGRRSGGAKVRCVATEKND
ETAAAAVGVEFADEEDYRKGGGGEILYVQMQATKPMESQSKIASKLLPISDENSVLDLVI
IGCGPAGLSLASESAKKGLTVGLIGPDLPFTNNYGVWEDEFKDLGLENCIEHVWKDTIVY
LDNNKPILIGRSYGRVHRDLLHEELLRRCYEAGVTYLNSKVDKIIESPDGHRVVCCERGR
EILCRLAIVASGAASGRLLEYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDCFQ
QKFSDSEQENPTFLYAMPMSSTRVFFEETCLASKDAMPFDILKKRLMYRLDAMGVRILKV
HEEEWSYIPVGGSLPNTDQKNLAFGAAASMVHPATGYSVVRSLSEAPRYASVISDILRNR
VPAQFLAGSSQNYSPSMLAWRTLWPQERKRQRSFFLFGLALIIQLNNEGIQTFFEAFFRV
PKWMWQGFLGSTLSSVDLILFSFYMFAIAPNQLRMNLVRHLLSDPTGSTMIKTYLTL
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggggctcacgggcgcggccatctccgcgccgctcggctgccgcgggctgccgcgcggc
gcggtcggcggcggaggcgacaaggcgcggagggcgggggcggagaggtggcggcgggcg
ggcgcgggtcggcgctcgggcggcgcgaaggtgaggtgcgtggcgaccgagaagaacgac
gagacggcggcggcggcggtcggcgtcgagttcgcggacgaggaggactaccgcaagggc
ggcggcggcgagattctctacgtgcaaatgcaggccaccaagcccatggaaagccagtcc
aagatcgcctccaagctgctgcccatatccgatgaaaattcagtacttgatttggttatc
attggctgtggtcctgctggtctttctctagcttcagagtcagccaagaaagggctcact
gtaggtcttattggccctgaccttccattcacgaacaactatggtgtctgggaggatgaa
ttcaaagatcttggtctagagaactgtatcgagcatgtctggaaggatactattgtctac
ctagacaataataaaccaatactgattggccgttcctatggcagggtgcaccgtgacctg
ctgcatgaggagttactgagaagatgctatgaagctggcgttacatacctcaactcaaaa
gtggacaagatcatcgaatctccagatggtcatagagtagtctgttgtgaaaggggccgt
gagatactctgcaggcttgccattgttgcttcgggggcagcatctggtaggcttctggag
tatgaggttggaggtccccgtgtctgtgtacagactgcatatggagtagaagttgaggtc
gaaaacaatccatatgatcccagtttaatggttttcatggactacagagattgtttccaa
cagaaattctcagactctgaacaagaaaatccaactttcctgtatgctatgcctatgtcg
tccacgcgagttttctttgaggaaacatgtttagcctctaaagatgcgatgccctttgat
atacttaagaagagattaatgtatcggttggatgcaatgggagttcgaatcctgaaagtt
cacgaggaggaatggtcctacattcctgttggagggtccttaccgaatacagatcagaaa
aatcttgcatttggtgctgcagcaagtatggtgcatcctgcaacaggctactcagtggtc
agatctttatctgaggctccaagatatgcctctgtaatatccgatatcttaaggaaccga
gttcctgcacaatttttggcaggaagttctcaaaattacagtccatcaatgctcgcatgg
agaacactatggcctcaagaaagaaaacgccaacgatccttcttccttttcggattggca
ttgataatccaactgaataatgaaggcatacaaacattcttcgaagcctttttcagggtg
ccgaaatggatgtggcaagggttcttgggctcaaccctttcatcggtggatctaatactg
ttttcattctacatgttcgccatagctccgaaccaattgcgaatgaacctcgtcagacat
ctcctctctgacccaacaggctcgacaatgatcaagacctacctgaccttgtaa
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