Panicum virgatum (switchgrass): 120708676
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Entry
120708676 CDS
T07260
Name
(RefSeq) putative ataxin-3 homolog
KO
K11863
Ataxin-3 [EC:3.4.22.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120708676
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120708676
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120708676
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C86
120708676
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
MJD
120708676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Josephin
UIM
UIM_2
Motif
Other DBs
NCBI-GeneID:
120708676
NCBI-ProteinID:
XP_039849988
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All DBs
Position
5K:complement(54822962..54826642)
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AA seq
332 aa
AA seq
DB search
MDAAASNGGLLYHEVQEGKLCAVHCVNTALQGPFFSEFDLAALAADLDQRERLVMLEGSQ
SPGAANAAAGDFLTEGSHNVSLGGDFSIQVLQKALEVWDLQVIPLDSPAAGSSLFDPEQE
VAFICHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFYLSAFIDTLKGSGWSIFAVRGNF
PKECPMATEGSNGFGQWLTPDDAQKITASCNQVQTPTHQVQSPLLGQQSEGMSEMDMIAA
QQEEADLNAAIAASLMDAGGPFSSYHAAQESSKPQDAPSPVIEAASSKDSNQEEADKSEP
SAPCEDTQEPASGSDTKTEVSSVEEKESAKED
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggcggcgagcaacggcgggctgctgtaccacgaggtgcaggaggggaagctc
tgcgccgtgcactgcgtcaacaccgccctgcaggggcccttcttctccgagttcgacctc
gctgcgctcgccgccgacctcgaccagcgggagcgcctcgtcatgctcgagggctcccag
agccccggcgccgccaacgccgccgctggggacttcctcaccgagggatcccacaacgtc
tccctcggaggcgatttcagcatccaggttttgcagaaggccctggaggtttgggacctc
caagtcattcctcttgattccccagctgcaggatcatccctattcgaccctgagcaggag
gttgctttcatttgccaccttcaggaccactggttctgcatcaggaaggtgaatggggag
tggtacaactttaacagtctctacccagctcctgagcacctgtcaaagttttacctctca
gctttcattgacaccctgaaggggtcaggctggagtatctttgcagttagaggcaatttc
cctaaggagtgccctatggcaactgaaggctctaatggtttcggtcaatggcttacccct
gatgatgcccagaagataacagcctcctgcaaccaggtgcaaacacctactcaccaggtg
caatcccctctacttggccagcaatcagaagggatgagtgaaatggacatgattgccgca
cagcaggaagaggctgatctgaatgctgcaatagccgctagcttgatggacgcagggggt
ccattttccagctatcatgcagctcaagaatctagcaagccacaggatgctccttctcct
gttatcgaagcagcttcaagcaaagacagtaaccaggaagaagctgataaatctgaacca
agcgctccctgtgaggacacccaggagccagcttcaggaagcgacaccaaaacggaggtt
tcttccgtagaggaaaaagaatcagcgaaagaagattag
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