KEGG   Panicum virgatum (switchgrass): 120708676
Entry
120708676         CDS       T07260                                 
Name
(RefSeq) putative ataxin-3 homolog
  KO
K11863  Ataxin-3 [EC:3.4.22.-]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120708676
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:pvir01002]
    120708676
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120708676
Peptidases and inhibitors [BR:pvir01002]
 Cysteine peptidases
  Family C86
   120708676
Ubiquitin system [BR:pvir04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   MJD
    120708676
SSDB
Motif
Pfam: Josephin UIM UIM_2
Other DBs
NCBI-GeneID: 120708676
NCBI-ProteinID: XP_039849988
LinkDB
Position
5K:complement(54822962..54826642)
AA seq 332 aa
MDAAASNGGLLYHEVQEGKLCAVHCVNTALQGPFFSEFDLAALAADLDQRERLVMLEGSQ
SPGAANAAAGDFLTEGSHNVSLGGDFSIQVLQKALEVWDLQVIPLDSPAAGSSLFDPEQE
VAFICHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFYLSAFIDTLKGSGWSIFAVRGNF
PKECPMATEGSNGFGQWLTPDDAQKITASCNQVQTPTHQVQSPLLGQQSEGMSEMDMIAA
QQEEADLNAAIAASLMDAGGPFSSYHAAQESSKPQDAPSPVIEAASSKDSNQEEADKSEP
SAPCEDTQEPASGSDTKTEVSSVEEKESAKED
NT seq 999 nt   +upstreamnt  +downstreamnt
atggacgcggcggcgagcaacggcgggctgctgtaccacgaggtgcaggaggggaagctc
tgcgccgtgcactgcgtcaacaccgccctgcaggggcccttcttctccgagttcgacctc
gctgcgctcgccgccgacctcgaccagcgggagcgcctcgtcatgctcgagggctcccag
agccccggcgccgccaacgccgccgctggggacttcctcaccgagggatcccacaacgtc
tccctcggaggcgatttcagcatccaggttttgcagaaggccctggaggtttgggacctc
caagtcattcctcttgattccccagctgcaggatcatccctattcgaccctgagcaggag
gttgctttcatttgccaccttcaggaccactggttctgcatcaggaaggtgaatggggag
tggtacaactttaacagtctctacccagctcctgagcacctgtcaaagttttacctctca
gctttcattgacaccctgaaggggtcaggctggagtatctttgcagttagaggcaatttc
cctaaggagtgccctatggcaactgaaggctctaatggtttcggtcaatggcttacccct
gatgatgcccagaagataacagcctcctgcaaccaggtgcaaacacctactcaccaggtg
caatcccctctacttggccagcaatcagaagggatgagtgaaatggacatgattgccgca
cagcaggaagaggctgatctgaatgctgcaatagccgctagcttgatggacgcagggggt
ccattttccagctatcatgcagctcaagaatctagcaagccacaggatgctccttctcct
gttatcgaagcagcttcaagcaaagacagtaaccaggaagaagctgataaatctgaacca
agcgctccctgtgaggacacccaggagccagcttcaggaagcgacaccaaaacggaggtt
tcttccgtagaggaaaaagaatcagcgaaagaagattag

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