KEGG   Panicum virgatum (switchgrass): 120711147
Entry
120711147         CDS       T07260                                 
Name
(RefSeq) survival of motor neuron-related-splicing factor 30-like isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120711147
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120711147
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 related factors
    120711147
 Complex B
    120711147
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    120711147
SSDB
Motif
Pfam: SMN_Tudor TUDOR Agenet Erp_C RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 120711147
NCBI-ProteinID: XP_039852503
LinkDB
Position
6K:complement(1260238..1263748)
AA seq 297 aa
MEDLSVEELASNLSTYKDQLLEVKKLIKDKKNDPGISEYLDMEKELQEVIMLTEELLATA
KQAESAQNVAGLSPPNYSAGVQSEGLDDLSHSHKFAVGARVQAVWSEDGEWYNATVEALT
PNGYYVAYDGWGNSEEVDPDNVRPLEEEAADALRQAEKEAEATKMAIKRKMEQAATSDFQ
ARSLPAKLRIEPSDPEDVKAAKRKKIHAFKSKARFEQLEFAQNKRQNAWQQFQTTKGKAK
KVGFFSGRKKESIFKSPDDHRGKVGVTGSGKGLTDFQRREKHLHLKGGSGDALDDEE
NT seq 894 nt   +upstreamnt  +downstreamnt
atggaggacctgagcgtggaggagctcgcctccaacctctccacctacaaggaccagctc
ctcgaggttaagaagcttattaaggacaaaaagaatgaccctggaatttctgaatatctc
gatatggagaaagagcttcaggaggtcatcatgctaaccgaagagcttttggcaactgca
aagcaagctgagagtgcccagaatgttgcaggtctatcaccaccgaattattcagctgga
gtgcaatcagagggactggatgacctttcacattcccataagtttgctgttggggctaga
gtgcaagctgtctggagtgaagatggggaatggtataatgcaacagttgaagctttgaca
ccaaatggatattatgtggcttatgatggctggggaaacagtgaagaggtagacccagat
aatgtgaggccgcttgaggaagaagcggcagatgctttgcggcaagctgaaaaggaagct
gaagccacaaaaatggcaataaagaggaaaatggaacaagctgcaacgtctgattttcaa
gcgcgtagcttgcctgccaaacttcgcatcgaaccaagtgatcctgaggacgtgaaagct
gctaagcgtaagaaaatacatgctttcaaatcaaaagcccggtttgagcagcttgaattt
gcgcaaaacaagcggcagaatgcatggcagcagtttcaaacgaccaagggtaaagctaaa
aaggtggggttcttctctggtcgcaagaaggagagcatcttcaagtcgccggacgaccac
agaggtaaggtgggtgtcaccgggagcggcaaaggcctgactgatttccagaggagggag
aagcatctgcacctcaagggtggctctggggacgcattggatgatgaggaatag

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