Panicum virgatum (switchgrass): 120711918
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Entry
120711918 CDS
T07260
Name
(RefSeq) probable 4-coumarate--CoA ligase 1
KO
K01904
4-coumarate--CoA ligase [EC:
6.2.1.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00130
Ubiquinone and other terpenoid-quinone biosynthesis
pvir00940
Phenylpropanoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00039
Monolignol biosynthesis, phenylalanine/tyrosine => monolignol
pvir_M00137
Flavanone biosynthesis, phenylalanine => naringenin
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
120711918
09110 Biosynthesis of other secondary metabolites
00940 Phenylpropanoid biosynthesis
120711918
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.12 4-coumarate---CoA ligase
120711918
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Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120711918
NCBI-ProteinID:
XP_039853529
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Position
6K:16902960..16919903
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AA seq
572 aa
AA seq
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MGSTEQQQPPEPVAAAVTAVEEASPEIIFQSKLPDIAITNTLPLHRYCFERLPEVADRPC
LIDGATGAVRTYAEVDRLTRRLAAALRREPFGLSRGAVVMNLMLNSAEFVLSFFAASRAG
AAVTTANPMSTPHDIANQIAASGATVVFTESMAVDKLPAVGGSLTVVLIDARRDGCLHFW
DDVMASVPDDEAAAGGGGGGGDEEFDPDDVVALPYSSGTTGLPKGVMLTHRSLSTNVAQQ
VDGDNPNIGFTADDVILCSLPMFHIYSLNTILMCGLRVGAAIVVMRRFDLARMMELVARH
RITIAPLVPPIVVAVAKSDQAAAHDLSSVRMVLSGAAPMGKDLEDAFMAKLPGAVLGQGY
GMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAELKIVDPDTGKSLGRNQPGEICIRGQ
QIMKGYLNNPEATKNSIDADGWLHTGDVGFVDDDDEIFIVDRLKEIIKYKGLQVAPAELE
ALLITHPSIVDAAVVGKQVEPEIGEIPVAFVAKAEGSELSEDDVKRFVAKEVIYYKKVRE
VIFVDKIPKAPSGKILRKELRKQLQQHHPQAV
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggggtccaccgagcagcagcagccgccggagccggtggccgccgccgtcaccgccgtg
gaggaggcgtcgccggagatcatcttccagtccaagctcccggacatcgccatcaccaac
accctcccgctgcaccgctactgcttcgagcggctccccgaggtggccgaccgcccctgc
ctcatcgacggcgccacgggcgccgtccgcacctacgccgaggtcgaccgcctcacccgc
cgcctcgccgcggcgctccggcgcgagccgttcgggctcagccgcggcgccgtggtcatg
aacctgatgctcaactcggcggagttcgtgctctccttcttcgccgcgtcgcgcgccggc
gccgcggtcaccaccgccaacccgatgtccacgccgcacgacatcgccaaccagatcgca
gcgtcgggcgccacggtcgtgttcaccgagtccatggccgtggacaagctccccgccgtg
ggcggcagcctcacggtcgtcctcatcgacgcgcgccgcgacggctgcctccacttctgg
gacgacgtcatggccagcgtccccgacgacgaggccgccgccggcggcggcggcggcggc
ggcgacgaggagttcgaccccgacgacgtggtggcgctgccgtactcgtccggcacgacg
gggctccccaagggcgtgatgctgacgcaccggagcctgagcaccaacgtggcgcagcag
gtcgacggcgacaaccccaacatcggcttcaccgccgacgacgtgatcctctgctcgctc
cccatgttccacatctactcgctcaacaccatcctgatgtgcgggctccgcgtcggcgcc
gctatcgtggtcatgcgccgcttcgacctcgccaggatgatggagctcgtggcgcggcac
cggatcaccatcgcgccgctcgtgccgcccatcgtcgtcgccgtggccaagagcgaccag
gccgcggcgcacgacctgtcgtcggtcaggatggtgctctcgggcgccgcgcccatgggc
aaggacctcgaggacgccttcatggccaaactccccggcgccgttctcggacagggctac
ggcatgacggaggccggtccggtgctgtccatgtgcctggcgttcgccaaggagcccttc
aaggtgaagtccggcgcctgcggcacggtggtgcgcaacgccgagctgaagatcgtcgac
cccgacaccggcaagtccctcggccgcaaccagcccggggagatctgcatcagggggcag
cagatcatgaaaggttacctgaacaacccggaggcgacgaagaacagcatcgacgctgac
gggtggctgcacaccggtgacgtcgggttcgtggatgacgacgacgagatcttcatagtc
gacaggctcaaggagatcatcaagtacaagggcctacaggtggcccctgccgagttggag
gcccttctcatcactcatccgagcatcgttgacgccgccgttgttgggaaacaagtcgag
ccagaaattggagaaatcccggtcgcctttgtggccaaggcagaagggagtgagctcagc
gaagatgacgtgaagcgatttgtggcaaaggaggtgatctactacaagaaggtccgcgag
gtgatttttgttgacaagatccccaaggcgccatcgggcaagatccttcgcaaggagcta
aggaagcagcttcagcagcatcacccacaagctgtgtga
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