Panicum virgatum (switchgrass): 120712123
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Entry
120712123 CDS
T07260
Name
(RefSeq) probable 4-coumarate--CoA ligase 3
KO
K01904
4-coumarate--CoA ligase [EC:
6.2.1.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00130
Ubiquinone and other terpenoid-quinone biosynthesis
pvir00940
Phenylpropanoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00039
Monolignol biosynthesis, phenylalanine/tyrosine => monolignol
pvir_M00137
Flavanone biosynthesis, phenylalanine => naringenin
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
120712123
09110 Biosynthesis of other secondary metabolites
00940 Phenylpropanoid biosynthesis
120712123
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.12 4-coumarate---CoA ligase
120712123
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GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120712123
NCBI-ProteinID:
XP_039853780
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Position
6K:complement(26656178..26660774)
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AA seq
549 aa
AA seq
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MGSVDESVAAAVAAPAAEVVFRSKLPDIEINNSQPLHTYCFGKMAEVAGRPCLIDGQTGA
SYTYAEVESLSRRAAAGLRRMGVGRGDVVMNLLRNCPEFAFSFLGAARLGAATTTANPFY
TPHEIHRQAEAAGARLIVTEACAVEKVREFAAARGIPVVTVDGRFDGCAEFAEVIAAEEL
EADADIQPDDVVALPYSSGTTGLPKGVMLTHRSLITSVAQQVDGENPNLHFRTDDVLLCL
LPLFHIYSLNSVLLAGLRAGCAIVIMRKFDLGALVDLVRAHGVTIAPFVPPIVVEIAKSP
RVTAADLASIRMVMSGAAPMGRELQDAFMTKIPNAVLGQGYGMTEAGPVLAMCLAFAKEP
FQVKSGSCGTVVRNAELKIVDPDTGAALGRNQPGEICIRGEQIMKGYLNDPESTKNTIDK
DGWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKD
DLAGEIPVAFIVRTEGSQLTEDEIKQFVAKEVVFYKKIHKVFFTDSIPKNPSGKILRKDL
RARLAAGVH
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgggttccgtggacgagtcggtggcggcggcggtggcggcgcccgcggcggaggtggtg
ttccggtccaagctgccggacatcgagatcaacaacagccagccgctgcacacgtactgc
ttcggcaagatggccgaggtggcggggcggccctgcctgatcgacgggcagaccggcgcg
tcctacacctacgcggaggtggagtccctgtcgcggcgcgccgcggcggggctccgccgg
atgggcgtgggcaggggcgacgtggtgatgaacctgctccgcaactgccccgagttcgcc
ttctcgttcctgggcgcggcgcggctgggcgccgccaccaccacggcgaacccgttctac
accccgcacgagatccaccggcaggcggaggcggcgggcgccaggctcatcgtcaccgag
gcctgcgccgtggagaaggtgcgcgagttcgcggccgcgaggggcatccccgtggtcacc
gtggacgggcgcttcgacgggtgcgccgagttcgccgaggtcatcgcggcggaggagctg
gaggccgacgccgacatccagcccgacgacgtcgtcgcgctgccctactcctccggcacc
accggcctccccaagggcgtcatgctcacgcaccgcagcctcatcaccagcgtcgcgcag
caggtcgacggcgagaacccgaacctgcacttccgcacggacgacgtgctgctgtgcctg
ctgccgctgttccacatctactcgctcaactcggtgctgctggcggggctccgcgccggc
tgcgccatcgtgatcatgcgcaagttcgacctgggcgcgctcgtggacctggtgcgcgcg
cacggcgtcaccatcgcgcccttcgtgccgcccatcgtggtggagatcgccaagagcccc
cgggtcaccgccgccgacctcgcctccatccgcatggtcatgtccggcgccgcgcccatg
ggcagggagctccaggacgccttcatgaccaagatccccaacgccgtgctcgggcagggc
tacgggatgacggaggccgggcccgtgctggccatgtgcctggccttcgccaaggagccg
ttccaggtcaagtccgggtcctgcggcaccgtggtgcggaacgccgagctcaagatcgtc
gaccccgacaccggcgccgccctcggccggaaccagcccggcgagatctgcatccgcggc
gagcagatcatgaaaggttacctgaacgaccccgagtccacgaagaacaccatcgacaag
gacggctggctgcacaccggggacatcggctacgttgacgacgacgacgagatcttcatc
gtcgacaggctcaaggagatcatcaagtacaaggggttccaggtgccgcctgcggagctt
gaggccctcctcatcacgcacccggagatcaaggacgctgctgtcgtatcaatgaaggat
gatctcgccggtgaaatcccggtcgccttcatcgtgcggacagaagggtctcaactcacc
gaggatgagatcaagcaatttgttgccaaggaggtggttttctacaagaagatccacaag
gtcttcttcaccgactccatccccaagaatccttcaggcaagatcctaaggaaggacttg
agagccaggctcgccgccggtgtccactga
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