Prionailurus viverrinus (fishing cat): 125149061
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Entry
125149061 CDS
T09889
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pviv
Prionailurus viverrinus (fishing cat)
Brite
KEGG Orthology (KO) [BR:
pviv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pviv03036
]
125149061 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pviv03400
]
125149061 (SMCHD1)
Chromosome and associated proteins [BR:
pviv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
125149061 (SMCHD1)
DNA repair and recombination proteins [BR:
pviv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
125149061 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
125149061
NCBI-ProteinID:
XP_047683587
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All DBs
Position
D3:complement(42332011..42494092)
Genome browser
AA seq
2002 aa
AA seq
DB search
MAAAGGGGPSVGTGEDGGGDGCRTVYLFDRREKESELGDRVLQVEERSDYARFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTSQLGNDIQPVFEASGLSLHYEEITKGPNCVIRGVTARGPVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITTQ
PKLIVHCKFFGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKAKIEIPSCKDVVP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHI
TSALADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGVGLDS
SHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLVKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHVMQVRAIYNKSNIEGPIIKLMILPDPEKPIRLNIKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNEPVKLVPKIQPATPAVS
NVRSVASRTLAKDLHLIITDDYNNQTGIDLVGTVVATIKGSNEEDTDTPLFIGKVRTLEF
PFVKGSAEITNLVLAESSPGRDSTEYFIIFEPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQVSKNIIMYRSLFEASKQLLDEMKCRVEEAKLKEAQLQTELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKATGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKP
IGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTAVNKLNNVI
EDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKGNDSLRHPTKVEMTDCP
IPPKRMRREASRQNRIITKSDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcggaccctcggtgggaactggagaggacggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgggaaaaggagtccgagctcggggatcgg
gtgctgcaggtcgaggagcgctcggactacgcaaggttccgcgcctctgtgtgtcagaca
cttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgacactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactacttacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattacgcaagtgaaggacaaaatcctttgccattt
gctcttgccgaattaattgacaattcattgtctgctacttctcgaaacactggtattaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgccgttgcagtaata
gataatggaagaggaatgacctctaaacagcttaacaactgggctgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gaacttgtgctttcgaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcttagaggagaaagaaaaagatagctttactgctgtggtt
atcacaggagtacaaccagaacacatacagtacttgaaaaattattttcttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggcaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatagaagatgacatgcagacgttgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattattcgataccaccctttcttatatgatagagaaacttaccccgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgttttatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagattttgactggtgtactcctccgaagaagcgagggcttgcgccaatt
gaatgttacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcact
aataaactgacttttatggatcttgagctaaaattgaaagacaagaacacccttttcaca
aggattttaaatggacaggaacagcgaatgaaaattgatagagaatttgctttatggctg
aaggactgtcatgagaagtatgacaaacaaataaaatttacatcttttaaaggaataatt
acacgtcccgatcttccttctaaaaagcagggcccctgggcaacatactcagcaatagaa
tgggatggaaaaatatataaagcaggacagctggtcaagacaatcaagacacttcctctc
ttttatggaagtatagtaaaattttttctttatggtgatcatgatggagaagtatatgcc
acaggaggagaggttcagattgcaatggaacctcaagcactgtatgatgaagtaaaaact
gtgccaattgcaaagctcgataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattatcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaagggggaagcaatgcagaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgaactcaaagttatattgcattcttcaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacattgaaattacaagttgtattgaatgaaagtaatgcagacacg
tatgcaggaagaccgctaccatcaaaagcaattaaattttctgttaaagagggtaaacca
gagaagttttcatttggtcttatggatcctccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactaggaaatgatattcagcca
gtttttgaagcaagtggtttatctttgcattatgaagaaataaccaaaggaccaaattgt
gtaattcgaggtgttacagctaggggccctgtaaactcttgtcaaggcaagaattttaat
ttgaaggttattctgccgggtttaaaagaagacacacagattttaaaaattagattacta
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttctggatgaatcagacaatataacaacacaa
ccaaaattgattgttcattgtaagtttttcggggctccaaaccttccagtctacgttgta
gactgcagcagttctggaaccagtattttaacaggatctgcaattcaagtgcagaacatt
aaaaaagaccagactctgaaagcaaaaattgaaatacctagttgtaaagatgtggtacct
gtggagaagactattaagttgcttcctagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatgttatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccacata
acatcagctttagcagataaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccgacatctgtgaaagatatgcgctat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaaggcca
cttcctgatgagcctaaacatttaaaatgtgagttaaaaggaggaaaaacagtacaaatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcagtatggaaatcagatt
caagcattttcaccaagttctttatctgcgttgggaattgctggggttggacttgacagc
tcccatttgaaaactacttttcaggaaaatacacaaagtataagtgtaaaaggcatcaaa
tttattccaggccctcctggaaataaggatctttgttttacttggcgtgaattttctgac
tttattcgagtgcagctaatttctggaccaccagcaaaacttctccttatagactggcca
gaattaaaggagtccattccagtgattaatggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggacaatccagcacctgtaccacaggtcaaaataagtctcgtg
aaagctaacaatttaaagcttactccttcaaaccaacaacataaaacagatgaaaggggc
agggctaatttgggagtgttcagtgtttatgcccctagaggagaacatgtgatgcaggtt
agagccatttataacaaaagtaacatagaaggacctataattaagttaatgattcttccg
gaccctgaaaaacctattcgtctcaatattaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcatcaaa
aatattaatccagcacgtatttccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaagaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtggggacctattgtatccag
tttggttttatgatggataaagcaaatattcttaacagtgaacagattatagttgatgtt
ctgcctaatgaacctgtgaagttagttcctaaaatccagccagctacaccagctgtttca
aatgttcgttcagttgccagtaggaccttggccaaagatttacatcttattattacggat
gactacaataatcaaactggaattgatttggttggcactgtagtagctacaattaaaggt
tctaatgaggaagatacagatacaccactctttattgggaaagttagaacgctggaattt
ccctttgtgaaaggctcagctgaaatcacgaatctagtgctggcagaaagtagtcctgga
agggatagtactgaatattttattatatttgagcctcagctacctgctctatcaagaaca
ttagaaccatatatcctaccctttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccaggtatctaagaatattataatgtacagaagttta
tttgaagccagcaaacagcttcttgatgaaatgaagtgccgagttgaagaagcaaaatta
aaagaggctcagttgcaaactgaactaaaaacacataatattgacattcctacaacacag
cagatgccgcacattgaagcacttttgaaaagaaaactatcagaacaggaagaactgagg
aaaaaacctagaagatcatgtactcttccaaactacactaaagccactggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgacagagccgcaatggttatttcttgg
catctggcgagtgacatggactgtgttgtcaccctgaccaccgatgctgcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaaaattgtattttaaaccc
attggagatccagtctttgcccgagatttgttaacatttccagacaacgtagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattacagaaaagaggttgttaaaattacacactgccctacactgctcaccagagat
ggagatcgcattcgaagtaacggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaataccaaaacaatgcctggtcttaggg
gaacaaatagatcttcttcaacagtatcgtactgctgtgaacaagttgaacaatgtgatt
gaggaccttaaccgtcagttagagtaccttcacactcctgatatgaagaagaaaaaacaa
gaacttgatgaacaagagaaaaatctgaaattaattgagcagaaactaggtatgactccc
acgcgtaagggtaatgactcattgcgccatccaacaaaggttgaaatgacagattgtcca
attcctcctaaaagaatgagaagagaagcttcaagacaaaataggattataaccaaatca
gatgtgtga
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