Pseudescherichia vulneris: LMA04_18265
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Entry
LMA04_18265 CDS
T08658
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pvj
Pseudescherichia vulneris
Pathway
pvj03030
DNA replication
pvj03410
Base excision repair
pvj03420
Nucleotide excision repair
pvj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMA04_18265 (ligA)
03410 Base excision repair
LMA04_18265 (ligA)
03420 Nucleotide excision repair
LMA04_18265 (ligA)
03430 Mismatch repair
LMA04_18265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvj03032
]
LMA04_18265 (ligA)
03400 DNA repair and recombination proteins [BR:
pvj03400
]
LMA04_18265 (ligA)
Enzymes [BR:
pvj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LMA04_18265 (ligA)
DNA replication proteins [BR:
pvj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LMA04_18265 (ligA)
DNA repair and recombination proteins [BR:
pvj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LMA04_18265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMA04_18265 (ligA)
MMR (mismatch excision repair)
DNA ligase
LMA04_18265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMA04_18265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WAH52015
LinkDB
All DBs
Position
3831408..3833426
Genome browser
AA seq
672 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLLRELRALEAEHPDLITPDSPTQ
RVGAAPLTAFTQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDALSYCCELKLDGLA
VSIIYENGVLIQAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPTRLEVRGEVFLPQAG
FEKINDEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGILQGGDLPRSHL
GRLQQFKAWGLPVSDRIRICDTPEAVLDFYHQVEADRPTLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWAVAFKFPAQEQLTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLKIGDRVVIRRAGDVIPQVVNVVESERPADARDVAFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEA
ASIEDLQKVPDVGIVVATHVFNFMAEESNREVIRDLVEGVGIHWPKPLVVNADEIDSPFA
GKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAV
IDEDEMLRLMGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacagctgaccgaactgcgaaccacgcttcgccatcatgaatat
ctctatcacgtgatggatgcgcctgaaatcccggatgccgaatacgaccgtctgctgcgc
gagcttcgcgcgctggaggctgagcatcccgatcttattacgccggactcccccacccag
cgagtaggggccgcgccgctgaccgcctttactcaggtgcgccatgaagtcccgatgctc
tcgctggataacgttttcgacgaagagagttttctggcattcaacaagcgcgtgcaggat
cgcctgaagagcaccgatgccctgagctactgctgtgagctaaagctcgacggtctggcg
gtgagtatcatctatgagaacggcgtactgattcaggccgccactcgcggggacggcacc
accggcgaggatatcaccaccaacgtgcgcaccatccgggcgatcccgctcaagctgcac
ggcgataatattccgacacggctggaggtacgcggtgaggtctttctgccccaggctggc
tttgagaagattaacgacgaggcccggcgcaccggtggcaaagtgtttgccaacccccgt
aacgcggcggcgggttcgctgcgccagctcgatccgcgtgtaactgcaaaacggccgctg
accttcttctgctatggggtagggatcctgcaggggggcgatctgccccgcagccatctg
ggtcgcctgcagcagttcaaggcctggggcctgccggttagcgatcgtattcgcatctgt
gacacgccggaagcggtgctggacttctatcatcaggtggaagcggatcgcccgaccctc
gggttcgatatcgacggcgtggtgatcaaggtcgattctctcgatctgcaggagcagctg
gggtttgtcgcccgtgcgccgcgctgggcggtagcgtttaagttccctgcgcaggagcag
ttgacctttgtacgggacgtcgagtttcaggtaggacgcaccggtgcgattacccccgtg
gcgcgcctggagccggtgcaggtggcaggcgtactggtgagtaacgccaccctgcacaat
gcggacgagatcgcgcggctgggtctaaaaattggcgatcgggtcgtgatccgccgggcg
ggagatgtgatcccgcaggtggttaacgtggttgagtccgagcgtccggcggatgcccgt
gacgttgcgttcccgacccactgtccggtctgcggctccgacgtcgagcgtgtcgaaggc
gaagcggtagcccgctgcaccggaggcttgatctgcggggcgcagcgtaaagagtccctg
aagcactttgtctctcgccgggcgatggacgttgacggcatgggcgataagattattgac
cagctggtagagaaggagtacgtgcatacgccagccgacctgttccgcctgacggcgggt
aaactgacggggctggaccgcatggggccgaagtcggcacagaacgtggtcaacgcgctg
gagaaggcgaaagagaccacctttgcccgcttcctctacgcgctgggcattcgtgaggta
ggcgaagccacggcggcaggcctcgcggcgcactttggtaccctggaggcgctggaggcg
gcatcgattgaagatctgcagaaggtaccggacgtcggcattgtggttgcgacccatgta
tttaactttatggcagaagagagcaaccgcgaagtgatccgcgatctggttgaaggggtg
ggcattcactggccgaagccgctggtggttaacgccgacgagatcgacagcccgtttgcc
ggtaaaacggtggtgttaaccggcagcctgagccagatgtcacgggatgacgctaaggca
cggctggtagagctgggggcaaaagtggcgggcagcgtatcgaaaaagaccgatctggtg
attgccggcgaggcggcaggctctaagctggccaaagcgcaggagctggggattgcggtg
atcgacgaagatgagatgctgcgcctgatgggggcctga
DBGET
integrated database retrieval system
