KEGG   Pseudomonas viciae: EPZ47_09265
Entry
EPZ47_09265       CDS       T07167                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pvk  Pseudomonas viciae
Pathway
pvk03030  DNA replication
pvk03410  Base excision repair
pvk03420  Nucleotide excision repair
pvk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pvk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EPZ47_09265 (ligA)
   03410 Base excision repair
    EPZ47_09265 (ligA)
   03420 Nucleotide excision repair
    EPZ47_09265 (ligA)
   03430 Mismatch repair
    EPZ47_09265 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvk03032]
    EPZ47_09265 (ligA)
   03400 DNA repair and recombination proteins [BR:pvk03400]
    EPZ47_09265 (ligA)
Enzymes [BR:pvk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     EPZ47_09265 (ligA)
DNA replication proteins [BR:pvk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     EPZ47_09265 (ligA)
DNA repair and recombination proteins [BR:pvk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     EPZ47_09265 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EPZ47_09265 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     EPZ47_09265 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      EPZ47_09265 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD 5_3_exonuc PTCB-BRCT DUF4796_N
Other DBs
NCBI-ProteinID: QBZ88893
UniProt: A0A4P7PFG2
LinkDB
Position
2028450..2030807
AA seq 785 aa
MTAVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQYPELVTSDSPTQ
RVGSVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTEGLDLPMGDLLGGGAAVEYSC
EPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPVLEVRG
EVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVTA
DIADTHIGNLNQLKAWGMPISRELKLAHGIDECLDYYRDIGERRSALPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPDNARPVEIPQECPVCGS
HVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDLHNRQVIKDLLRHGL
DIQDQGELGAEFSASTTLGGFLDKLNIPSVGPGGAQKLADKFGSLEAVMSADWLDMRQAL
PEKQANAVREFFAIAANRQQAEAAEKQLQDFGMHWLSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVAFLSK
HGLTV
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgactgccgtcgaaacccgcattcaacagctgcgtaccgagctggaccagcacaactac
cgctaccacgtcctcgatgaaccgagcatccccgacgccgagtacgaccgcctgttccat
gagctcaaggccctggaagagcagtacccggaactggtgaccagcgactccccaacccag
cgggtcggcagcgtggcgctgtcggcgttcagccaggtgcggcacgagatcccgatgctc
agcctgggcaacgctttcgacgaaaccaccatgcgcgagttcgaccgacgggtgaccgaa
ggcctcgatctgccaatgggcgatctgctgggcggcggcgcggcggtggaatacagttgc
gaaccgaagctcgatggcctggcggtcagcctgttgtaccaggacggcatgctggtgcgc
ggcgccactcgcggtgacggcaccaccggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaacattcccctcaagttgcagggcagcggctggccgccggtgctggaagtgcgcggc
gaggtctacatgtccaaggccggcttcgagcgcctcaacgccacgcagttggaggcgggc
ggcaagaccttcgccaacccgcgcaacgcggcggcggggagcctgcgccagctggattcg
aagatcaccgccaaccgcccgctggaattctgctgctacggcatcggccaggtgaccgct
gatattgccgatacccatatcggcaatctcaatcagctcaaggcctggggcatgcccatc
agtcgcgaactgaagctggcccacggtatcgacgaatgcctggattactaccgcgacatt
ggcgaacggcgcagtgcgttgccttatgaaatcgacggtgtggtgttcaaggtcaacagc
atcgcctcccagcgtgaactgggtttccgtgcccgggagccgcgctgggccatcgcccat
aaattcccggccagcgaagaactcaccgagctgttggacgtcgagttccaggtcggtcgc
actggcgctgtcacgcccgttgcacggctcaagccggtcaaggtggctggcgtgaccgtg
gccaacgccacgttgcacaacatggacgaagtggcgcgcctgggtttgatgatcggcgac
acagtgattatccgtcgcgccggggacgtgatcccacaagtggtgcaagtgataaccgag
cgccgcccggacaatgcccggccggtggagatcccgcaagaatgtccggtctgtggctcc
catgtggaacgcacgcagttgatcaagcgcagcaagggccgcgagaccatcagcgaaggt
gcggtgtaccgctgcgtcggtcgcctggcctgcggcgcgcagctcaagcaggcgatcatt
catttcgtgtcgcgccgggccatggacatcgagggtctgggcgagaagagcgtcgaacag
ttggtggacgagggactggtggggtcgccggccgatctgtatgccctgaccttcgagcag
gtggtcgacctggaaggcttcgctgaactgtcgagcaagaacctgctggcggccatcgtc
gacagcaaaaagccgagcctcgcgcgctttatctacgccctcggcatcccggacgtgggc
gaggagaccgccaaggtcctggctcgctccctcggctccctggagcgcgtgcaggcagct
ttgcctcaagtcctcacgtacttgcccgatgtcggcctggaagtggctcacgagatccac
agcttcttcgaagacctgcacaatcgccaggtgatcaaggacttgctgcgccatggcctc
gatatccaggaccagggcgagctgggtgccgagttctccgccagcaccaccctgggcggt
tttctggacaagctgaacattccgtcggtcgggccgggcggggcgcagaaactggcggat
aaattcggttcactcgaagcggtcatgagtgccgactggctcgacatgcgccaggcgctg
ccggaaaaacaggccaacgccgtgcgtgagttcttcgctatcgctgccaaccgtcagcag
gccgaagctgccgagaagcagctgcaggactttggcatgcattggctgagcgagaagaaa
gtcgtcgaaggcctgcccgaggcgggacacacctgggtgctgaccggttcgctggagttg
atgagccgcgatgtcgccaaggacaagctggaaagcctgggggccaaggtggctggttcc
gtgtcggcgaaaacccattgcgtggtagccggaccgggcgcgggctcgaagctgaccaag
gctaacgagcttgggctcaaggtgctggatgaagaggcgtttgtggcctttttgagtaag
catggcctcacggtttaa

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