Penaeus vannamei (Pacific white shrimp): 113807186
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Entry
113807186 CDS
T06111
Name
(RefSeq) telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113807186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113807186
03032 DNA replication proteins [BR:
pvm03032
]
113807186
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113807186
mRNA cycle factors
Common to processing body (P body) and stress granule
113807186
DNA replication proteins [BR:
pvm03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
113807186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
113807186
NCBI-ProteinID:
XP_027214203
LinkDB
All DBs
Position
15:941434..959785
Genome browser
AA seq
1575 aa
AA seq
DB search
MNSTAVECNSTKAVENTKENNNTKEQDGPSRVRKAKKPEIQIYRPGALRQKRSNQVGDQG
GKEANEGKVPESKSDSKDDTVRVESGSRASRKGRQGKGGDNTSGNVPETKQNASEMGKNS
SRKSSIEYVQSTHLHDKTNRGDSTHQDGKPGRGQLGRDGKRAQRNNKLTENTGKVEILEK
DNKEQNLNHVITESTPDLKGKRHSSNRDNRGRSDQSRKKREEVGHQKLDTIDANCDEKRL
PKKEAGHQNARMGSEKEKGTGSNAGLEYQVKQKEEKSQEKVSSHREEKKVPSGANIQNEK
VRRDGALKNERIGEKDDLCLNKGASGARVQLGRAPEKKSDYSRQVDAKHRGTFVEYPENA
NEKGSWKSKEHVRSASIKQRRREKNFENAKKSGRGRDREGNDGYEKVSQKFHDKLDLEFE
SFMGYEDNGDDSNQISVQALANKVDELALKSVGKGQDQIEKTGKAKSYASARENRKNRMG
GKPSAQGRQVASHGDLKIEVTVNKNSQERTAYIRQESDLKRNEKGNKYHLAQELKGDDTA
FLQDSDFTAKSGWYGKSVGSAHTDKFEKEDADPMIFVDVPEDDWGTEVDNDTVWCNQQGD
ESPATWTEKPDWKSKRESQRSEGEDPHRRTESPGRRGLIQLPSHNSNNDGQEVVSSSSHH
LRSSTPVVQKHLYNPNNPSKPVPVVPSARDMPPSREVQREVAKGAGDNAHGSVPAHNNQL
SEYVIEGQSPKVDPSLLYNIQKGEMDINYYVSSNQLPFEFRRIMDIRLHLQVCYKQLLVT
DIRICQEKNIEGNLWKTLYYVIIEKLREYISREPGLKDRSLATLMMLVEEGHKYLQDLLE
ALQREYNFTLEEHLEEGGTSNSVTRGRVRLALMSAQKILLSLGDLARYREQYNSTPNYAL
AKKWYQMALQVHPRNGRPFNQLAIIAVNQKRPLDVVYYYVRSLTASNPFMSARDSLVSMF
DDIRKKYQAVQRSEPDQDIGRRNEGRALSGEGLRQEIWIRPDSGATNRRTLSQSNNDDNS
GALDDLKKLPLEQLMKRFLTSYLHCHGMLFSRVGLDGFRECCIGMLHEFSVLLQSSPPRL
STNHLLQILAINMYAVSNTELKDNRVGSGYRSAAQELALVLSQEMFGCLAQHVVELLPHN
VQHHPQQQQPPQQQQQQPVAAVDPQRLFMPTLAHFMPPLKAWCDWLLYHSAIWNPPPAAR
EYSTSGVNCDPWSSVAELATILRGFGPPDVPLTDAVSADAVPVKLMEDSFLRGYEPLLPA
HRTLSYSPSHIHSGRACDWVRVLRLQTCLCQFLCGVDPPVLRLQKTDQGDVLVSVVDTSP
PDTPTASRLSLSTSDVEIEDSFSDSEPSDIEEDVEAETGLDDDAPLASTVKLLSMRKKML
EKKQRQQRKLQTLLEGSVTLEMEVRPRFLVPDTNCFIEHLDLIKALVNSTPYTVMVPLVV
LNELDGLSRDAAVAKYGSIGHAVRVKEGAAAALHYLRDTKPHSLKCVTSQGSVLSSTSFT
AEIDMPDATNDDKILSCCVHFCSDSTQRRPIKAGVRRLYREVVLLTEDRNLRVKAHARDV
PVRDLLDFAQWAGVR
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atgaactctactgctgtagaatgcaattcaacaaaggcagtggaaaataccaaagagaac
aataatacaaaagagcaagatggtccatctcgtgttcgcaaggcaaaaaagcctgaaata
caaatttatcggccaggagcccttagacagaagcgctcgaaccaggtgggggatcaagga
gggaaagaggcaaatgaaggtaaggtacctgagagtaaatctgacagcaaggatgataca
gtcagagtggaatctggttccagggcttccaggaaaggaaggcaaggaaaaggtggggat
aatacaagtggaaatgtacctgaaactaagcagaatgctagcgagatgggaaagaacagt
tcgaggaagagtagcatagaatatgtgcagagtacacacctccatgataaaaccaacaga
ggagactccacccatcaggatggcaaaccagggcgaggacagctcgggcgagatgggaaa
cgagctcagaggaataataaattaactgaaaatactggaaaggttgaaattttggaaaaa
gacaacaaggaacaaaaccttaaccatgttatcacagagagcaccccagacctgaagggg
aagcgtcacagtagcaacagggacaacagaggccgcagtgaccagtcaaggaaaaagaga
gaagaagttggtcaccagaaacttgataccatagatgcaaactgtgatgaaaaaaggctg
ccaaagaaagaagcaggacaccagaatgcaaggatggggtcagagaaggaaaagggcaca
gggagtaatgctggcttggaataccaggtgaagcagaaagaagagaagtctcaagaaaaa
gtttctagtcacagggaagagaagaaagttccctctggggcaaatatacaaaatgaaaag
gtcaggagagatggtgcattgaaaaacgaaagaattggagaaaaggatgatttgtgccta
aataagggagcaagtggagcgagagtgcagttgggaagagcacctgaaaaaaaatctgat
tattcgaggcaggtggatgccaaacacagagggacttttgtggagtacccagaaaatgct
aacgaaaaagggtcttggaaatcaaaagaacatgtaagatctgcttccatcaagcaaaga
aggagagaaaagaactttgagaatgcaaagaagtcaggaagaggaagagacagggaaggg
aatgatggttatgagaaagtttcccagaagttccatgataaacttgacttagagtttgaa
agtttcatgggatatgaagataatggtgatgacagcaatcaaatatcagttcaggcttta
gctaacaaagtcgatgagttggccttaaaaagtgttggcaagggacaagatcaaattgag
aaaactgggaaagcaaagagctatgcaagtgcaagagagaacagaaagaatcgcatgggt
ggaaaaccctcggctcaaggcaggcaggtggcaagtcatggagatctcaagatagaagtc
actgttaataagaatagccaagaaagaacggcgtacatcagacaggaaagtgacttgaag
cgaaatgagaagggaaacaagtatcatttggctcaagaactcaaaggagatgacacggcc
tttttgcaagactctgatttcacagcaaagtctggctggtatgggaagagtgtaggtagt
gctcatactgacaagtttgaaaaagaagatgcagatcccatgatatttgttgatgtacct
gaggatgattggggaacggaggtggataatgatacagtgtggtgtaatcagcaaggagac
gaatcacccgccacatggactgagaagccagattggaagtccaagcgagagagtcaaagg
tcagagggggaggatccccataggagaaccgaaagccctgggcgcaggggactcatacag
ctgccatcccataattcaaacaatgatggacaggaagtggtctcctcctcttctcaccat
cttaggtcatcaacacctgtagtgcagaaacatttatacaacccaaataatcctagcaaa
cctgtacctgttgtacctagtgctcgtgacatgcctccgtcccgtgaagtgcaacgtgag
gtggcaaagggtgcaggggacaacgcgcatgggtctgtccctgcacataacaaccagcta
agtgaatatgtgatcgagggccaaagtccaaaagtggacccatcacttctgtacaacatc
cagaaaggagaaatggacatcaattattatgtaagcagcaatcaacttccctttgaattt
cgacggataatggacatcaggcttcacctccaagtttgttacaagcagctattagtgact
gacatccggatctgccaggagaagaacattgaggggaacctgtggaagacgctgtattac
gtgataattgagaaactaagggaatacatcagcagggagccaggattaaaggatcgcagt
ctggctacactgatgatgcttgttgaagagggccataaatacttacaagacttactggaa
gctctgcaaagggaatacaatttcacactggaggaacacttggaagagggaggaacctca
aactctgtgacaagaggcagggtgcggctcgcattgatgtctgcccagaaaatacttctc
tcactgggtgatttagcacgatacagagagcagtataattccactcccaattatgcattg
gcaaagaaatggtaccagatggctctccaagttcacccgagaaatggccgtccgtttaac
cagctggccattattgctgttaaccagaaaaggcccctagatgttgtgtattactatgtg
cgctctctcactgcctctaaccccttcatgtcggcaagagactcgctagtatccatgttt
gatgacataagaaagaaataccaagcagtgcagcgtagcgagccagaccaagacataggc
cgcaggaatgaaggaagagccctcagcggggagggcttacggcaggagatttggataagg
ccggacagcggtgcaaccaatcgccgcactctctcgcagtctaacaatgatgacaacagc
ggagccttggatgacctaaagaaattaccgctcgagcagctcatgaagaggttccttacc
agctacctccactgtcacggcatgctcttctcacgtgttgggctcgatggcttccgtgag
tgttgcattggcatgctgcatgagttctctgtgctcctgcagtcctcgcctccaaggctg
tccaccaatcatctgttgcagattctggccattaatatgtatgctgttagtaacacagaa
ctaaaggacaatcgtgttggcagtgggtacagatcagctgcccaggaactggccttggtt
ctgtcacaggagatgtttgggtgtctggcacagcatgtggtagagctcctcccacacaat
gtgcagcaccatcctcagcagcagcaaccccctcaacagcagcagcagcagccagttgct
gctgtcgatcctcagagactgtttatgccaacccttgcccacttcatgcctcctctcaag
gcttggtgtgattggttgctgtaccacagtgctatttggaacccacctcctgccgcccgc
gagtactccacttcaggggtgaactgtgatccctggtccagtgtggcagaattagcaacc
attttacgtggatttgggccacccgatgtccctctgacagatgcggtctcggctgatgct
gtgccagtgaagctaatggaagacagttttcttaggggttatgagccgttgttgcctgcc
caccgcactctgtcctactctccatcccatattcactcgggtcgagcctgtgactgggtg
cgtgtattgagacttcagacgtgtttatgtcaattcttgtgtggagtggatccaccagtc
ttgcggctacaaaagacagaccagggagacgtactggtatctgtggtagatacgtcccct
ccagacactccgacggcatcaaggctctctctaagcacatcagatgtagagattgaggac
tccttcagtgacagtgagccctcagacattgaagaagatgttgaggcagagaccggtttg
gatgatgacgcaccccttgcctccacggtgaagctgctcagcatgaggaagaagatgctg
gagaagaaacagagacagcaacggaaattgcagacccttttggaaggctcagtcactttg
gagatggaagttcgaccaagattccttgtgcccgacaccaactgctttatcgaacatttg
gacctgataaaggctcttgttaacagtactccatacactgtcatggtgcctcttgtcgta
ctgaatgagctagatggcctgtccagagatgcggctgtggccaaatacggatctattggc
catgctgtccgggtgaaggagggagcagcagcagcccttcactatctcagagacaccaag
ccccattccctgaagtgtgtgacgtcacagggctccgtactctcatctacaagcttcaca
gcagagattgacatgccagatgccacgaatgatgacaagattctgtcatgttgtgttcat
ttctgcagtgattccacccaacgtcggcctattaaagctggagtgcgacgcctataccga
gaggtggtgcttctgactgaggatcgtaaccttagggtaaaggcccatgcccgcgatgtg
cctgtgcgagacctcttggactttgctcagtgggcaggggtgaggtga
DBGET
integrated database retrieval system