Penaeus vannamei (Pacific white shrimp): 113819453
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Entry
113819453 CDS
T06111
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113819453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvm03041
]
113819453
Spliceosome [BR:
pvm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113819453
Complex C
U5 SnRNP specific factors
113819453
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
113819453
NCBI-ProteinID:
XP_027227487
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All DBs
Position
7:complement(23322827..23338757)
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AA seq
975 aa
AA seq
DB search
MDADLYDEFGNYIGPELDSDDDEEEDDEDDYHDQDQDMNGYDDDDGVGGEEEEVSAQAVV
LHEDKQYYPSAADVYGPEVETIVQEEDAQPLTQPIIQPVKVKKFSHVEKDLPATSYNLEF
LADLMDNPTLVRNVSLVGHLHHGKSTFIDCLISQTHPEFRSKEDVPVRYTDTLFTEGERG
LSIKATPITLVMQDVRNKSYLMNIFDTPGHVNFSDEVTAAMRISDGVVLFIDAAEGVMLN
TQRLLKHAVQEHLAITVCINKIDRLILELKLPPQDAYYKLRHIVEEVNSLLLQYTDQENP
KTISPLLGNVCFASSQYALCFTLKSFAKLYAQHYGYDLPLEDFARRLWGDIYFNPRTRKF
TKKPPTSTSQRSFVEFILEPLYKIFAHIVGDVDTHLLPLMDELGIHMSKEEQRMNIRPLL
KLFMTKCIGDFEGFVDMCVQHIPSPQANGKEKVETTYTGPLDVELAENMMACDPEGALVV
HTTKQYPNEDATAFHVFGRVLSGTLHANQDVRVLGEKYTLMDEEDSRILTVGRLWVHEGR
YSIEVNAVPAGNWVLIEGIDEPIVKTATITDLPPSSELHIFRPLKFNTQSVIKIAVEPVN
PSELPKMLDGLRKVNKSYPLLSNKVEESGEHIILGTGELYLDCVMHDLRKMYSEIDIKVA
DPVVSFCETVVDTSSLKCFAETPNKRNKITMIAEPLERGLAEDIEGEVVQINWDRRRLGE
FFQTRYDWDVLAARSIWSFGPDHSGPNILVDDTLPSEVDKNLLSSVRDSIVQGFQWGTRE
GPLCEEPIRNCKFKILDAVIAEEPLHRGGGQVIPTARRVAYSAFLMATPRLMEPYYFVEI
QAPADCVSSVYTVLTKRRGHVTQDAPVAGSPLYTIKAFIPAIDSFGFETDLRMHTQGQAF
CLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFDDP
MLLELARQDVTLNYA
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggatgcggacttgtatgatgaatttggcaattacattggcccagagctggactctgat
gatgatgaagaggaggatgatgaggatgactaccatgaccaggaccaggatatgaatggc
tatgacgatgacgatggagtgggaggggaggaggaggaggtctcggcacaggcagtggta
ctgcatgaagacaagcagtattaccccagtgcagcagatgtctatggtccagaggtggag
acaatagtacaagaggaagacgcacaaccattgacacagcccatcatccagccagtgaaa
gtgaagaagttcagccatgtcgagaaggacctgccagctaccagctacaacctggagttc
cttgctgacctcatggataatccaaccctggtacgcaatgtgtcgctggtggggcacctc
caccacggcaagagcacattcattgactgcctgattagccagactcaccctgaattcaga
tccaaagaggatgttccagtgaggtacacagacacactgttcacggaaggggagcgtggt
ctcagtatcaaggcaacacccatcaccctggtcatgcaggatgtgcgcaacaagagctac
ctcatgaacattttcgatactccaggtcatgtcaatttctctgatgaggtaacagcagca
atgagaataagtgatggagtggtcctgtttattgatgcagctgagggtgtaatgctgaat
acacaacgcctgttaaagcatgctgtgcaggaacacttagccataactgtatgtatcaac
aaaattgaccgtctcatactggaactgaaactcccaccacaagatgcttattacaagtta
agacatattgttgaggaggtgaactccctcctattgcagtacaccgaccaggaaaatcct
aagactatttcaccactccttggcaatgtttgctttgcaagttctcagtatgcattgtgt
ttcacccttaagtcatttgccaagctgtatgctcagcattatggctacgacctgcccttg
gaggactttgccagaagactgtggggagacatctacttcaacccaaggacaaggaagttt
accaagaagcctcccacttcaacttctcagagaagctttgtggaatttatccttgaacct
ctttacaagatatttgcccacattgtaggtgatgtggacacacacctgttaccactgatg
gatgagcttgggatccacatgagcaaagaggaacagcgcatgaatattcgaccactgctg
aaacttttcatgacaaagtgcattggggactttgagggctttgttgacatgtgtgttcag
cacattccctctccacaggccaatgggaaagagaaggtggaaactacatacacaggccca
cttgatgtagagttagcagaaaacatgatggcttgtgatccagaaggagctcttgtagtt
cacaccaccaagcagtacccaaatgaggatgcaacagcattccacgtgtttggcagagtt
ttgtcaggaacactgcatgccaatcaagatgtccgggttcttggtgaaaagtatactttg
atggatgaggaagactctcgtatactaacagtaggtcgcttgtgggtccatgagggaagg
tacagtattgaagtaaatgctgtacctgcaggtaattgggttttgattgagggtattgat
gaacctattgtaaaaacagcaaccatcacagaccttccccctagcagtgaactacacatc
ttcagaccactgaaattcaacacacagtcagttataaagattgcagtagaacctgtgaat
ccatcagaattgccaaagatgttggatggtcttcgtaaggttaacaaatcgtacccactg
ttgagcaataaggtagaggaatcaggtgaacacatcatccttggcactggggaattatac
ttggactgtgtgatgcacgacctgcggaagatgtactcagaaattgacatcaaggtagct
gatcctgttgtgagcttttgcgagactgttgtagatacctcatctctgaagtgttttgct
gagacgccaaacaagagaaacaagatcaccatgattgctgagccattggagagaggcttg
gcagaagacattgagggagaagtagtacaaatcaactgggatagaagacgactgggtgag
ttcttccagacaagatatgactgggatgtgttggctgccaggtccatttggtcttttggt
ccagatcacagtggtcccaatattcttgtagatgacaccttgccatcagaggtcgacaag
aatcttttgtcgtcagttagggattctattgttcaaggtttccagtggggaacgagggaa
gggcccctttgtgaagagcctatcagaaactgtaaattcaagattcttgatgccgtaatt
gcagaggaaccactgcatcgtggtggtggccaggtcattccaacagccagaagagtagca
tactctgctttcctgatggcaacgccgcgtctcatggagccctattactttgtggagatt
caggcaccagcagattgtgtgtcgtcggtctatacagtgctcaccaaacggcgaggtcac
gtgacccaggacgcacctgtggctggctcccccctgtacaccatcaaggccttcatcccc
gccatcgattccttcggcttcgagacagatctccgaatgcacacacagggccaggccttc
tgtctgagtgtgttccaccactggcaaattgtgcccggcgaccctctcgacaagagcatc
gtcatccgacccctagagccccagccggccactcacttggcccgcgagttcatgatcaag
acgcgccgaaggaagggcctctcggaggatgtgtccatcaacaagttcttcgacgaccct
atgttgttggaactggccagacaggatgtcactctcaactatgcatag
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