Penaeus vannamei (Pacific white shrimp): 113821442
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Entry
113821442 CDS
T06111
Name
(RefSeq) trithorax group protein osa isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113821442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvm03400
]
113821442
Enzymes [BR:
pvm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
113821442
DNA repair and recombination proteins [BR:
pvm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
113821442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
113821442
NCBI-ProteinID:
XP_069998436
LinkDB
All DBs
Position
29:17002025..17036038
Genome browser
AA seq
1359 aa
AA seq
DB search
MEVLDGRPAPSSPDHSDPQAHLNMGGVSPAEGPTPPAPPPPPPQQQPQPDGYWNMHLEVL
SKLKGEGKDWYEGDSLDGIGQAGALKQEPDPYAPYSHLHQHHPMTPESMHGPSLNGPHNG
PHNGPHNGPLTGPHNGSHMGYPPLQQQTQQHQHYQGYQSHPGMGDMSPMSPNYQGHPRPP
PHPQQHMNQQHMGPQHMGQYPDQQHMGHPHPGQYPGQPMGGHMGQGLPGQGHPGHEGPPG
REGDPYSFVDEYSGPPPRPVEEILGQTQPKRRGRKPKHIKLMENGAVPWYDDCSVHATTA
AGVHETPDAISISGDPLAIAAAQAAHEAKKRKWKQLGPDGKPVLSVVKQRKKVDRFDGIP
EDEVTKKTLPDHLGPNLDIVIISKFPFQIGINPGLFAAYKGHHYAGPGNHFLTCTNQGKC
LYLSGLIPEPLTSEDDFRLLEHGIGFTNIVARTTRGSADLTRKEIKEGGQILLSKLQQFQ
PRIAVFNGKGIYEIFSGKKEFTFGRQPEKIEGTRTHVWVMPSSSARCAQLPRALDKVPFY
TALRKFRDFIKGTLDELNEEEITFVNVKAKSYKMEHSEKQEHGCEGQPGEVCPTADPLSS
PIDGDSMLTIKEEPDVSTKLEGDVDEDEISKNMPKTLFNLNGMTREQLDCMDCPTIPIRK
KRGRPKKTPDDPNAPPRPRPRPMNMDPLLFNGEEPIKKKRGRPKKVLEDGTIPPPKRPGR
KPKALKEMLAAQQQQHPHLQQHTQHPQPHQPHQPHQPHQPHQPHQPHQPHQPHQQHQPQP
HPQHQQHPQHQQLSQQQQLSQQQQLSQQQQSLSQQQPPQPVGMTHMNGMMSPTGFSPNPG
AQTFSPQYGGHTPVHGGGSLTPNHNAGNQTPGHTAAMLPRGPTPQQQFGQSPGYSPGPVS
SQLQQQQQSQQQHRATPYSQADTPSELKVEEEHHLGLSSPPGSPLMAQPDFEPPSSMPEG
DMSIGASDTQSSTALTPGHQEDGKTSVPLNSRDQPQLTPTMPGQFSNPTTPVDGSSYQNY
PSYPSNASHSPSMVKPAVHPGQSPTLVNKGDIASKSLSGLESLVDQIPSLNEHETSSQHS
AHSNSAPCSNPTTPGPPAGSAPFSPGHVPPTSSYQSYPGVSSSGASAYSTSHYGSPQSSH
PYSPHYSSNSTNLSTNFSVSSLANSSISTTMSYSSAYDLGSPQASTSSFSVSSLTSSAPA
PSPSMYSQSYSPAPPTAPGPPPSHSSYPDIMSPSMLAPTPPMGSSFMGSPSLMSSPTPMS
SSMGSSSMGPMGALHSSMGMAGSQLPYPYSQYSEAAPGYPPPGHSTFPYPPTAPGFHVPS
PRFPYPSPYANSPYTQGYSQNAVLERIKQTSMGMGFGGF
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgttggacggccgcccagccccctcaagcccggatcacagcgacccccaagca
cacctcaacatgggcggtgtgagtcccgcagagggtcccactccccctgcccccccgccg
ccgccgccacagcagcagccacaacccgacggctactggaatatgcaccttgaggtgctc
agcaagttgaagggtgagggtaaggactggtatgagggagacagcctggatggtatagga
caggccggagccctaaagcaagagccagacccgtatgctccttactctcacctccaccaa
caccaccccatgaccccagaatccatgcatggaccctcactcaatggaccacacaacgga
ccacataatggaccacataacggaccactcactgggcctcacaacggatctcacatgggg
tacccgcctctccagcagcagacccagcagcatcagcactatcagggctaccagagtcac
cctgggatgggggacatgtctcccatgtcgcccaactaccagggacacccaagacctcca
cctcacccgcagcagcacatgaatcagcagcacatgggtccgcagcatatgggtcagtac
cctgaccagcagcatatgggtcacccacaccctggccaatacccaggccagcccatggga
ggtcacatgggccagggcttgccaggtcagggccatccggggcatgaagggcctccggga
cgggaaggggacccatacagttttgtggacgagtacagcggtccgcctcctagaccagtc
gaggagattcttggccagacgcagcccaagagaagagggcgtaaaccaaagcacataaag
cttatggaaaatggtgctgtgccgtggtatgatgactgcagtgtgcacgccacgacagct
gcaggggtacacgaaacacctgatgcaatcagtataagcggggacccattagcaatagct
gctgctcaagctgcccacgaagccaagaagcgcaagtggaagcaattaggacctgatggc
aaaccagtcctgtcggtggtcaaacagcggaaaaaagttgaccgatttgatggtatcccg
gaggacgaagtgaccaagaagacgttacccgaccacctaggacctaacctggatatagtc
attatttctaaattcccattccagattggaataaatccaggtttatttgcggcttacaag
ggacaccattatgccggcccaggaaaccactttttgacctgcaccaaccaagggaaatgc
ttatacctgtctggcctgatccccgagccacttacttccgaggatgacttccgattactg
gaacatggaatcggctttaccaacattgttgctcgtacaacaaggggctcggcagatctt
acacgcaaggaaattaaagaaggtggacagatattattgtcaaaattgcagcagttccag
ccaagaattgcagtcttcaatggaaaaggcatttatgaaatcttttctgggaaaaaggag
ttcacctttggcagacaaccggaaaagattgagggaacacgcacacatgtatgggtgatg
ccctcgtcctcggctcgatgtgctcagctacctagagccctcgacaaggtcccgttctac
actgctctgaggaagttccgcgacttcatcaaaggaacactagacgagctgaacgaggag
gagattacctttgtgaacgtgaaggcaaagtcttacaaaatggaacatagtgagaagcag
gagcatgggtgtgaagggcagcccggagaggtctgtccgacggctgacccattgagctca
cccatagacggagacagcatgttgaccatcaaggaggagcctgatgtatccaccaagctg
gaaggtgatgtggatgaggatgaaattagtaaaaacatgcccaagactctcttcaacctg
aatgggatgaccagagagcagttagactgtatggattgtcccacaataccaatcaggaaa
aagcgaggaaggcctaagaagaccccagacgaccccaatgctccaccccgtcctcggcca
cgtccgatgaacatggatccactcctgttcaatggtgaggagcccatcaagaagaagaga
gggaggccgaagaaggtcctggaggatgggacgataccccctcccaagcgaccgggtcgg
aagccgaaggcgctcaaggagatgcttgctgcccagcagcagcagcatccgcatttacag
cagcatacccagcacccacagccccatcagccccatcaaccacatcagccccatcagcca
catcagccccatcaaccacatcagccccatcaaccacatcagcaacaccagccacagcca
catccacaacaccagcaacacccacaacaccaacaactaagtcagcagcaacaactaagt
caacagcaacaattaagtcaacaacaacaatcactaagtcaacaacagcctccacaacca
gtggggatgacgcatatgaatggcatgatgtccccaacgggctttagtcccaacccaggt
gctcagactttctctccccagtacggaggccacaccccagtgcatggaggagggagcctc
acccccaaccacaatgctggcaatcagaccccaggtcacactgcagccatgttaccaaga
gggccaacaccccagcagcaatttggccagtcacctggttactcccctggtccagtgagc
agtcagctccagcagcagcaacagagtcagcagcagcacagagcaacaccttacagccaa
gctgacacaccatcagaactcaaggtggaagaagaacaccatttaggtctgtcttctcct
cctggatcaccactgatggcccagccagattttgagcctcctagcagtatgccagaagga
gacatgtctattggtgcttcagacacacagagctcaacagccctaaccccaggtcatcag
gaggacgggaagacgtctgtaccattaaactctagggaccagcctcagctcacgccaacc
atgcctggccagttctcaaaccccacaacccctgttgatggcagttcttaccagaactac
ccctcttatccttccaatgcatcacattcaccatcgatggtcaagcctgcagtacatccc
ggacagtctccaaccttggtgaataagggagatatagcgtcaaagagcttgtcgggcctg
gaatcattagtggaccagataccaagcttaaatgagcatgagacaagcagccaacattct
gctcactctaactctgccccctgttccaacccaaccactcctggccctcctgcggggtcc
gccccgttcagtcctggccatgttccgcccacctcctcttatcagagctacccaggggtc
agcagctcaggagcttcagcatactccacctctcactatggctccccacagtcctcacac
ccatactccccacactacagctccaacagtacaaacctcagtacaaatttcagtgtgagc
tcactggccaatagcagcattagtacgactatgtcttatagtagtgcttatgatctgggg
tctccgcaagcgtcgaccagctcatttagtgtgtcatcgttgacgagcagtgcccctgcc
ccctcaccctccatgtacagccagtcctattctcctgctcctccaactgctcctgggcca
cctccatctcactcatcatacccagatattatgagcccctccatgttggctcccacacct
cccatgggctcatcatttatgggatcccccagtttgatgagttcacccacaccaatgagc
tcaagtatgggtagctcctcaatgggacccatgggtgctctacactcctctatgggaatg
gcagggtcacagctaccatacccatattcacaatatagtgaagctgccccaggatacccc
cctcctgggcactccacgttcccgtaccctcccacagctcctgggttccatgttccctcc
ccccgcttcccctacccgtccccctacgctaactccccctatactcaaggctactcccag
aatgccgtgctggagcgcatcaagcagaccagtatgggcatgggctttgggggattttaa
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integrated database retrieval system
