Penaeus vannamei (Pacific white shrimp): 113823555
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Entry
113823555 CDS
T06111
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm04120
Ubiquitin mediated proteolysis
pvm04140
Autophagy - animal
pvm04144
Endocytosis
pvm04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113823555
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
113823555
04140 Autophagy - animal
113823555
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
113823555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvm04131
]
113823555
04121 Ubiquitin system [BR:
pvm04121
]
113823555
Enzymes [BR:
pvm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113823555
Membrane trafficking [BR:
pvm04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
113823555
Ubiquitin system [BR:
pvm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
113823555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
TRAF3_RING
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
Sina_ZnF
zf-TRAF_2
RING_XB3-XBAT31
zf-RING_6
zf-Nse
DUF5740
Motif
Other DBs
NCBI-GeneID:
113823555
NCBI-ProteinID:
XP_069969484
LinkDB
All DBs
Position
34:complement(11949670..11960065)
Genome browser
AA seq
594 aa
AA seq
DB search
MESVEESITILSRQEGFDYEFVPPLDPKYECAICLLGLRSPIQTTCGHRFCKDCIFNCMS
ESSSRCPVDNTPLTEADLFPDSCAEREILQLSVKCPNHGLGCRRTVDLMYIEHHTQACSF
QPVMCPNECSATVLRKEVEQHLSSECVLRVKKCALCEQPFTFNQEQLHLLSCVRVTVPCE
MCGAMMPRGEVAGHMTETCPKVVVACTFAEHGCHHKMTRADLNQHMLQATQLHLQLLSSA
YKKINTFVSDLSRTVGLIQSPFGNFSRQPSLRSQLSATSPIPENHTSPSLPERTLEKSLG
ATGGTVGCSEKSGVFSSPQFGDKGGADSGIELNKLHLQLNQVSIEGVSKSPSSKSLSTVS
HQEIILRDLCEKSVDLNQRMLEETIKLSNLAKRIEEVDALVEAQLTEMSGKYCNGDYVWR
IKNFSQFCAELQNKPGRVCHSPSFYTSQFGYKFCLRTNITWKSEQYFLTLFIHGMQSEND
DFLDWPFSGRITLSVLDCDISLPKNHITETMVTKPGLQAFKRPDVARNPKGFGFTEFVPL
AKILQPSTGTFLKNDTLCIRATVCPNTWNHESSQSMEKLGIYKEKLHIEKQSCV
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggagagtgtcgaagagtccattacaattttgtctcgtcaagagggatttgattatgaa
tttgtcccacctcttgaccctaagtatgagtgtgccatatgtctactgggcttacgctca
cccatacaaactacatgtggtcaccgcttttgtaaagactgtatcttcaactgtatgagt
gagagcagtagtcgctgtccagttgataatactcccctcacagaagctgatttattcccc
gactcgtgtgctgaacgtgagatattgcagcttagtgtgaagtgtccaaatcatggcttg
ggctgtaggcgaacagttgacttgatgtatatagagcatcatactcaggcttgttcattt
cagccagtcatgtgccctaatgaatgctcagcaacagtgttacggaaagaagtggaacag
catctgagttcagaatgtgtcctgcgggtaaagaaatgtgctctctgcgaacagcctttc
actttcaatcaggagcaactgcatttattgagttgtgtgcgtgtgactgtcccatgtgag
atgtgtggagctatgatgccacgtggggaggttgcaggacacatgacagagacttgccca
aaggtggtggtggcgtgcacttttgctgaacatggctgccatcacaagatgactcgagct
gatttaaaccaacatatgttacaagccacgcagctacatctgcagcttctttcttcagca
tataagaagatcaacacctttgtgtcagatcttagtcgtacagtaggtctgattcagtct
ccatttggaaacttcagtcggcagccaagtttacgcagccagctatcagcaacatcacca
atcccagagaatcacacaagtccatcacttccagaaagaaccctagaaaagtccttaggt
gcaactggagggacagtaggctgtagtgagaaatcaggtgtcttttcctctcctcagttt
ggggataaaggcggtgctgactcagggattgaactgaacaagcttcatctacagcttaac
caagtgagtatagaaggagtaagcaagagtccgtcttctaagtcactgtccactgtgtct
catcaagaaattattttaagggatctgtgtgagaagagtgtagatctgaatcagaggatg
cttgaagaaaccatcaagttgagtaatttagctaaaagaattgaagaagttgatgccctt
gttgaagctcagctaacggaaatgagtggaaaatattgtaatggtgattatgtttggaga
attaaaaatttctcccaattttgtgctgaattacagaataaaccaggcagagtatgtcat
agcccatcattctacacatctcaatttggatacaaattttgtcttcgaacaaatatcaca
tggaaatctgaacagtattttttgactctatttattcatggaatgcaaagtgagaatgat
gactttcttgactggccctttagtggacgcataacactttctgtactagactgtgatata
tcattacctaaaaaccatatcacagagaccatggtgacaaaaccaggtctgcaggcattc
aagcgtcctgatgttgctcgtaatccaaaaggatttggattcacagaatttgtacccctt
gcaaaaatacttcaacccagcacaggaaccttcctcaaaaatgatactctctgcattaga
gcaactgtttgccctaacacttggaaccatgagagtagtcagagcatggaaaaacttgga
atatataaagagaagcttcatatagagaagcaaagctgtgtgtga
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