KEGG   PATHWAY: pvp04136
Entry
pvp04136                    Pathway                                
Name
Autophagy - other - Pteropus vampyrus (large flying fox)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
pvp04136  Autophagy - other
pvp04136

Other DBs
GO: 0006914
Organism
Pteropus vampyrus (large flying fox) [GN:pvp]
Gene
105289007  ATG3; ubiquitin-like-conjugating enzyme ATG3 [KO:K08343]
105290020  ATG13; autophagy-related protein 13 isoform X1 [KO:K08331]
105290897  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
105291038  ATG9A; autophagy-related protein 9A isoform X1 [KO:K17907]
105291380  ULK2; serine/threonine-protein kinase ULK2 [KO:K08269] [EC:2.7.11.1]
105291731  GABARAP; gamma-aminobutyric acid receptor-associated protein [KO:K08341]
105292483  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
105292883  PIK3C3; phosphatidylinositol 3-kinase catalytic subunit type 3 isoform X2 [KO:K00914] [EC:2.7.1.137]
105293570  PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform isoform X1 [KO:K04382] [EC:3.1.3.16]
105294198  [KO:K17606]
105294429  MTOR; serine/threonine-protein kinase mTOR [KO:K07203] [EC:2.7.11.1]
105294564  WIPI2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908]
105295894  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 isoform X1 [KO:K08341]
105296118  ATG4A; cysteine protease ATG4A isoform X1 [KO:K08342] [EC:3.4.22.-]
105297863  ATG2A; autophagy-related protein 2 homolog A isoform X1 [KO:K17906]
105298350  ATG4C; cysteine protease ATG4C [KO:K08342] [EC:3.4.22.-]
105298800  ATG2B; autophagy-related protein 2 homolog B [KO:K17906]
105299027  ATG7; ubiquitin-like modifier-activating enzyme ATG7 isoform X2 [KO:K08337]
105299644  IGBP1; immunoglobulin-binding protein 1 [KO:K17606]
105299964  PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [KO:K04382] [EC:3.1.3.16]
105301186  RPTOR; regulatory-associated protein of mTOR [KO:K07204]
105302964  ATG4B; cysteine protease ATG4B isoform X3 [KO:K08342] [EC:3.4.22.-]
105303344  MLST8; target of rapamycin complex subunit LST8 isoform X1 [KO:K08266]
105303750  ATG9B; autophagy-related protein 9B isoform X1 [KO:K17907]
105303847  ATG10; ubiquitin-like-conjugating enzyme ATG10 isoform X1 [KO:K17888]
105305361  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 isoform X2 [KO:K08341]
105305404  BECN2; beclin-2 [KO:K08334]
105305657  ATG4D; cysteine protease ATG4D [KO:K08342] [EC:3.4.22.-]
105306008  ATG16L1; autophagy-related protein 16-1 [KO:K17890]
105306274  BECN1; beclin-1 isoform X1 [KO:K08334]
105307010  ATG101; autophagy-related protein 101 [KO:K19730]
105307906  PIK3R4; phosphoinositide 3-kinase regulatory subunit 4 isoform X1 [KO:K08333] [EC:2.7.11.1]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   

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