KEGG   Pseudomonas veronii: PverR02_23310
Entry
PverR02_23310     CDS       T04853                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pvr  Pseudomonas veronii
Pathway
pvr03030  DNA replication
pvr03410  Base excision repair
pvr03420  Nucleotide excision repair
pvr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pvr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PverR02_23310
   03410 Base excision repair
    PverR02_23310
   03420 Nucleotide excision repair
    PverR02_23310
   03430 Mismatch repair
    PverR02_23310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvr03032]
    PverR02_23310
   03400 DNA repair and recombination proteins [BR:pvr03400]
    PverR02_23310
Enzymes [BR:pvr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     PverR02_23310
DNA replication proteins [BR:pvr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PverR02_23310
DNA repair and recombination proteins [BR:pvr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     PverR02_23310
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PverR02_23310
   MMR (mismatch excision repair)
    DNA ligase
     PverR02_23310
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PverR02_23310
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD 5_3_exonuc PTCB-BRCT DUF4796_N
Other DBs
NCBI-ProteinID: AQY67849
LinkDB
Position
complement(5144584..5146950)
AA seq 788 aa
MTAAHTRILELRAELDQHDYRYYVLDEPSIPDAEYDRLFQELKALEAEHPELVTRDSPTQ
RVGGAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPTGDLFGGGAAVEYSC
EPKLDGLAVSLLYLNGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQVTA
DISDTHIGNLQQLQKWGMPISHELKLAKGIQECLDYYRDIGERRSNLPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVTERRPAHARAVHIPESCPVCGS
HVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQ
LVDEKLIASPADLYMLKYEQIIDLEGFADVSSKKLISAIEHSKTPTLARFIYALGIPDVG
EETAKVLARSLASLERVQRALPEVLTYLPDVGLEVAHEIHSFFEDRHNQDVIGALLAPEK
CGLQLQDQGDLSAEFAASTTLGGLLDKLNVPSVGPGAAQKLADKFGSLEGVIKADWLDMR
QALPEKQAKAVREFFDNPDHAQRALAIEQQLEEFGMHWQSAKKVIEGLPEAGHTWVLTGS
LERMSRDVAKDKLESLGAKVAGSVSAKTYCVVAGPGAGSKLAKASELGLKVLDEDAFVDF
LARHNITV
NT seq 2367 nt   +upstreamnt  +downstreamnt
atgaccgccgcccacacccgcatcctcgaattgcgcgctgaactggatcagcacgactac
cgttattacgtcctcgacgagccgagcatcccggacgccgagtacgatcgcttgttccag
gaactcaaggccctggaggccgagcatccggagctggtcacgcgtgattcgccgacgcag
cgggtcggcggtgcggcgttgtcggcgttcactcaggtcaagcatgagattccgatgctc
agcctgggcaacgccttcgatgaaaccaccatgctcgagttcgatcgccgggtgaccgaa
ggcctcgacctgccgaccggcgacctgtttggcggcggtgctgcggtggaatacagctgc
gagccgaagttggatggcctggcggtcagcctgctgtatctgaacggcgaactggtgcgc
ggcgccacccggggcgacggcaccaccggcgaagacatcagcgtgaatgtgcgtaccgtg
cgcaatatcccgttgaagctgcacggcagcggctggccggcgaccctggaagtgcgcggc
gaggtgttcatgtccaaggccggtttcgagcgcctgaacgcctcgcaactggaagtcggc
ggcaagaccttcgccaacccgcgcaacgccgccgccggcagcctgcgccagctggattcg
aaaatcaccgccagccgcccgctggagttctgctgctatggcattggccaggtgacggcg
gatatcagcgacacccacatcggcaatttgcagcagctgcagaagtggggcatgccgatc
agccatgagctgaaactggccaagggcatccaggaatgcctggactactaccgcgatatc
ggcgagcggcgtagtaacctgccctatgaaatcgacggtgtggtgttcaaggtcaacagc
attgcctcccagcgcgaactgggtttccgcgctcgtgagccgcggtgggcgatcgcgcac
aaattcccggccatggaagagctgaccgagctgctcgacgtggaattccaggtcggccgc
accggcgccgtcaccccggtggcgcgtctgaaaccggtcaaggtcgcgggtgtgaccgtg
tccaacgccaccctgcacaacatggatgaagtggcgcgcctgggcctgatgatcggcgac
acggtgatcatccgccgcgccggggacgtgatcccgcaggtcgtctcagtggtcaccgag
cgccgcccggcacacgcccgcgcggtgcatatcccggaaagctgcccggtgtgcggctcc
cacgtcgagcgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggc
gcggtgtaccgctgcgtcggtcgcctggcctgcggggcgcagctcaagcaggcgatcatc
catttcgtctcgcgccgggcgatggacatcgacggcctgggcgacaagaccatcgagcaa
ttggtcgacgaaaaactcatcgcctcgccggcggatctgtacatgctcaagtacgaacag
atcatcgacctggaaggcttcgccgatgtctccagcaaaaagctgatcagcgccatcgaa
cacagcaagacgccgaccctggcacgtttcatctacgccctgggcattcccgacgtgggc
gaggagaccgccaaggtgctggcgcgctccctggcgtccctggagcgcgtgcagcgcgct
ttgccggaagtgctgacgtacctgccggacgtgggcctggaagtggcgcacgagatccac
agcttctttgaagaccgccacaaccaggacgtgatcggcgcgctgttggcgccggaaaag
tgcggcctgcaactgcaggaccaaggcgacctgagcgcggagttcgccgccagcaccacc
ctcggcggtttgctcgacaaactcaacgtgcccagcgtcggccccggcgccgcgcagaaa
ctggcggacaagttcggctccctcgaaggcgtgatcaaggccgactggctcgatatgcgc
caggcgctgcccgagaagcaggccaaggccgtgcgcgagttcttcgataaccccgaccac
gcccagcgtgccctggccatcgagcagcaactcgaggaattcggcatgcactggcagagc
gcgaaaaaagtgatcgaaggtttgccggaggcggggcacacctgggtgctgaccggctcg
ctggagcggatgagccgcgacgtggccaaggacaagctcgaaagcctcggcgccaaggtg
gccggttcggtgtcggcgaaaacctattgcgtggtggccgggccgggtgccggttcgaag
ttggccaaggccagcgaactgggcctgaaggttctggacgaagacgccttcgtggacttt
ctggctcggcacaacatcaccgtctga

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