KEGG   PATHWAY: pvu00195
Entry
pvu00195                    Pathway                                
Name
Photosynthesis - Phaseolus vulgaris (common bean)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
pvu00195  Photosynthesis
pvu00195

Module
pvu_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:pvu00195]
pvu_M00161  Photosystem II [PATH:pvu00195]
pvu_M00163  Photosystem I [PATH:pvu00195]
Organism
Phaseolus vulgaris (common bean) [GN:pvu]
Gene
PHAVU_009G011900g  hypothetical protein [KO:K02703] [EC:1.10.3.9]
PhvuCp04  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
PhvuCp50  psbB; photosystem II 47 kDa protein [KO:K02704]
PhvuCp18  psbC; photosystem II 44 kDa protein [KO:K02705]
PhvuCp19  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
PhvuCp41  psbE; photosystem II protein V [KO:K02707]
PhvuCp40  psbF; photosystem II protein VI [KO:K02708]
PhvuCp53  psbH; photosystem II protein H [KO:K02709]
PhvuCp30  psbI; photosystem II protein I [KO:K02710]
PhvuCp38  psbJ; photosystem II protein J [KO:K02711]
PHAVU_002G236100g  hypothetical protein [KO:K02711]
PhvuCp31  psbK; photosystem II protein K [KO:K02712]
PhvuCp39  psbL; photosystem II protein L [KO:K02713]
PhvuCp20  psbM; photosystem II protein M [KO:K02714]
PHAVU_002G024000g  hypothetical protein [KO:K02716]
PHAVU_003G249800g  hypothetical protein [KO:K02716]
PHAVU_008G015100g  hypothetical protein [KO:K02717]
PHAVU_008G196500g  hypothetical protein [KO:K02717]
PHAVU_003G2476001  hypothetical protein [KO:K02717]
PHAVU_010G052300g  hypothetical protein [KO:K08901]
PHAVU_005G090800g  hypothetical protein [KO:K08901]
PHAVU_003G045300g  hypothetical protein [KO:K08901]
PHAVU_005G055200g  hypothetical protein [KO:K03541]
PHAVU_009G125100g  hypothetical protein [KO:K03542]
PhvuCp51  psbT; photosystem II protein T [KO:K02718]
PHAVU_007G177300g  hypothetical protein [KO:K02721]
PHAVU_001G157100g  hypothetical protein [KO:K02721]
PHAVU_001G257100g  hypothetical protein [KO:K02723]
PHAVU_002G253700g  hypothetical protein [KO:K02723]
PHAVU_010G069000g  hypothetical protein [KO:K02724]
PhvuCp17  psbZ; photosystem II protein Z [KO:K02724]
PHAVU_005G105900g  hypothetical protein [KO:K08902]
PHAVU_001G165200g  hypothetical protein [KO:K08903]
PHAVU_007G153500g  hypothetical protein [KO:K08903]
PhvuCp14  psaA; photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
PhvuCp15  psaB; photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
PhvuCp66  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
PHAVU_007G055900g  hypothetical protein [KO:K02692]
PHAVU_007G155500g  hypothetical protein [KO:K02693]
PHAVU_008G133700g  hypothetical protein [KO:K02693]
PHAVU_003G186300g  hypothetical protein [KO:K02694]
PHAVU_005G004000g  hypothetical protein [KO:K08905]
PHAVU_010G148800g  hypothetical protein [KO:K02695]
PhvuCp34  psaI; photosystem I subunit VIII [KO:K02696]
PhvuCp44  psaJ; photosystem I subunit IX [KO:K02697]
PHAVU_002G140800g  hypothetical protein [KO:K02698]
PHAVU_009G216400g  hypothetical protein [KO:K02698]
PHAVU_008G054400g  hypothetical protein [KO:K02699]
PHAVU_002G269400g  hypothetical protein [KO:K02701]
PHAVU_011G096400g  hypothetical protein [KO:K14332]
PhvuCp37  petA; cytochrome f [KO:K02634]
PHAVU_003G0939001  hypothetical protein [KO:K02634]
PhvuCp54  petB; cytochrome b6 [KO:K02635]
PHAVU_004G081500g  hypothetical protein [KO:K02635]
PHAVU_005G109400g  hypothetical protein [KO:K02636] [EC:7.1.1.6]
PhvuCp55  petD; cytochrome b6/f complex subunit IV [KO:K02637]
PhvuCp43  petG; cytochrome b6/f complex subunit V [KO:K02640]
PhvuCp21  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
PHAVU_009G020300g  hypothetical protein [KO:K02638]
PHAVU_006G216600g  hypothetical protein [KO:K02639]
PHAVU_006G216700g  hypothetical protein [KO:K02639]
PHAVU_006G216800g  hypothetical protein [KO:K02639]
PHAVU_002G045400g  hypothetical protein [KO:K02639]
PHAVU_011G094400g  hypothetical protein [KO:K02639]
PHAVU_007G022500g  hypothetical protein [KO:K02639]
PHAVU_003G230200g  hypothetical protein [KO:K02639]
PHAVU_006G128400g  hypothetical protein [KO:K02641] [EC:1.18.1.2]
PHAVU_003G263200g  hypothetical protein [KO:K02641] [EC:1.18.1.2]
PHAVU_002G108000g  hypothetical protein [KO:K02641] [EC:1.18.1.2]
PHAVU_002G098700g  hypothetical protein [KO:K08906]
PHAVU_010G031400g  hypothetical protein [KO:K02114]
PhvuCp08  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
PhvuCp07  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
PHAVU_006G149700g  hypothetical protein [KO:K02115]
PHAVU_006G044600g  hypothetical protein [KO:K02115]
PhvuCp29  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
PHAVU_003G211100g  hypothetical protein [KO:K02113]
PhvuCp28  atpF; ATP synthase CF0 B subunit [KO:K02109]
PhvuCp27  atpH; ATP synthase CF0 C subunit [KO:K02110]
PHAVU_005G066100g  hypothetical protein [KO:K02110]
PhvuCp26  atpI; ATP synthase CF0 A subunit [KO:K02108]
PHAVU_003G256800g  hypothetical protein [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
pvu00196  Photosynthesis - antenna proteins
pvu00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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