Phaseolus vulgaris (common bean): 137821133
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Entry
137821133 CDS
T03093
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
137821133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvu03400
]
137821133
Enzymes [BR:
pvu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
137821133
DNA repair and recombination proteins [BR:
pvu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
137821133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
T_Ag_DNA_bind
Motif
Other DBs
NCBI-GeneID:
137821133
NCBI-ProteinID:
XP_068481682
LinkDB
All DBs
Position
9:complement(35353154..35368770)
Genome browser
AA seq
1172 aa
AA seq
DB search
MATEQTKFSVLCSLFTWTQRTKSAPRKRFKFRKFLDAFCIDRNFFPAIRLILPNLDRERG
SYGLKESVLATSLIDALGISRDSPDALRLVNWRKGGAATGATAGNFALVAAEVLHLRQGT
ASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAW
KKLHGKEVVVECKFDGDRIQIHKNGPEIHFFSRNFIDHSEYAHAMSEIIIQNVLVDRCIL
DGEMLVWDTSSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKER
HEILCKVVRPMKGRLEILVPNAGINSHLTSGEPCWSFIAHNIDEVERFFKETIENRDEGI
VLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRHGGQVAQFLVGLAER
PSPNEQPKRFISFCRVGTGLSAEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERP
DVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELV
HSSNGTTQKDTEYGSKQDSKPKRTKSSTGGEKKNMSIVPSHLIQTDISSIKGGSLIFSNM
MFYFANVPPSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHY
SWVLDCYEQKKLVCLQPKYFLFLSELTKKKLREEIDEFSDSFYLDLDLGDIKQLLSNIHK
SEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTAIPSLKGDWHFILQLALRRFKLEVLMGG
GKVTSNLTCATHLVAFLVPGCRTDSEQILNSFTSAERKILQSKRLHVVKSQWLEDCSDSS
KRLPEDSYSLKPWGIEESTAEDCEQDLALEALLSGDNIEDQNTSFSDKGNRQRSEKVACE
GNSALLSQEKGIKRKRGRPAGSGIKIVKPAGKQTRRARPQNVKKPAKICEYESSDESDSR
DKRPIEKEIDTRAGSLNLCKKHSERQENEERDNVHVSGTVESSEQNKVEKLEDLKENEHE
RMLIPEIEMIDGHNNDQNNVVIEKLEFSADPLQAMLFDMIPSLGPKKAEQPMNLSVREEK
VPEASNAATEPTTTKKNKVSFMDAANDLLKDW
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggagcagaccaaattcagcgtcttgtgcagcctcttcacgtggacgcagcgg
actaagtcggcgccgagaaaacgcttcaaattccgcaagtttctcgacgccttctgcatt
gatcgcaacttcttccctgccattcgcctcattcttcccaacctcgatcgcgagcgcggc
tcctacggcctcaaggagtccgtcctcgccacctccctcatcgacgccctcggcatctcc
cgcgactcccccgatgccctacgactcgtcaattggcgcaagggcggcgccgccaccggc
gcaacagctggaaattttgccctcgtcgccgccgaggtgctgcacctccggcaagggacc
gcttcgggagggttgacgataagggagttgaatgagttgcttgaccggttggcgtccggt
gaaaacagggctgagaaaattttggttctttctacccttatccaaaagacaaatgcacag
gaaatgaagtggattatcatgataatcctgaaagatctaaagctgggaattagtgaaaaa
agcatttttcacgagttccatcctgatgcagaagacttgtttaatgttacttgtgactta
aaattagtatgtgaaaagctaagggatcggaatcaacggcataagcgacaggatattgaa
gttggaaaagctgtgcgcccccaattagctaagagagtagctaatgcaactgaagcatgg
aagaagcttcatgggaaggaagtggttgttgagtgcaaatttgatggcgaccgaattcaa
attcataaaaatggacccgagatacactttttctcaaggaacttcattgatcattctgaa
tatgcacatgcaatgtcagaaatcataatacaaaatgttcttgtagataggtgtattctt
gatggtgaaatgttggtgtgggacacatcctcgaaacgctttgccgagtttggctcaaat
caggaaatagccaaggcagcaagagatggacttgatagtgacagacagttatgctatgtt
gcgtttgatatcctttattttggagataccagtgtgattcaccaaactttgaaggaacga
catgagattttatgtaaagttgttaggccaatgaagggacgattggaaattttggtacct
aatgctggtatcaacagtcatcttacttcaggtgaaccttgttggtcatttattgctcat
aatattgatgaagttgagcggtttttcaaggaaaccattgaaaatagagatgagggaatt
gttttaaaagaccgcagctccaaatgggagcctagtgatcgtagtggaaagtggctaaaa
ttgaagcctgaatacattcaagctggctctgatttggatgtacttatcataggtggctac
tatggttctggacgacatggaggacaggttgctcaattcttggttggccttgcagaacgt
ccatctccaaatgaacaacctaagcggtttatatccttttgcagagttggcactggactc
tctgctgaggagcttgatgttgtagtgaccaaactgaaaccgtacttcagaaagtatgaa
tatccaaagaagaggccaccaagtttttatcaagtaactaatcattcaaaagaaagacct
gatgtgtgggttgatagccctgagaaatcaattattctgtctattaccagtgatatccga
actatagaatctgaggtatttgctgcaccttacagcctgagatttcctaggattgacagg
gtgagatatgacaaagcttggaatgaatgtcttgatgttcaatcgtttatagaactagtg
cattctagcaatggtaccacacagaaggatacagaatatggcagtaaacaggacagtaaa
ccaaaaagaacgaaatcctccactgggggagagaagaaaaacatgtcaattgttccttct
catttaattcaaactgatatttccagcattaaggggggctccttaatattttcaaatatg
atgttctacttcgctaatgtacctccatcacattctcttgagtccttacacaaaataatt
gctgagaacgggggaactttttcaatgaatttgaacaactcagtcacccattgtgttgcc
gccgacagcaagggctttaaatttgaagcagcaaagcgtcatggtgatatcattcattat
tcttgggtactagattgttatgaacaaaagaagcttgtctgcttacagcctaagtacttc
cttttcctttctgaactgacaaagaagaagttacgagaagaaattgatgagttctcagac
tctttctacttggaccttgatcttggagacatcaagcagctcttaagcaatattcataag
tctgaagatgtcagcactgtcgatcattacaggaaaaaatactgcccaaaggataagtgg
tctttcttttgtggatgttcaatttatttccacactgcaataccttcactgaaaggagat
tggcattttatattacaacttgctttgaggagattcaagcttgaagttctcatgggtggt
ggaaaagttacctctaatcttacctgtgcaacccatttagtggcctttcttgtgccagga
tgtcggactgactctgaacaaatactgaatagttttacttcagcagaaagaaaaattctc
caaagcaagaggttgcatgtagttaaatcccaatggttggaagattgttcagacagtagc
aaaagattaccagaagactcttacagtttgaaaccttggggaatagaagagtcaactgct
gaagattgtgaacaggacttggcgttagaggctcttctgagtggagataatatagaagac
caaaacacatctttctctgacaagggaaatcggcaaagaagtgaaaaagttgcatgcgaa
ggcaattcggccttgttatcccaagagaagggtatcaaaaggaaaagaggaagacctgcg
ggcagtggtataaaaattgtaaaaccagctggcaaacaaactcgaagagcacgaccacaa
aatgtgaaaaagcctgctaaaatatgtgaatatgaatcatcggatgaaagtgattctcgt
gacaagagaccaattgagaaggagattgacactagagcaggaagtcttaacctttgcaag
aaacactcagaacgccaggagaatgaggaacgggataatgtccatgtttctgggacagtg
gaaagttctgaacaaaataaggtagagaagctagaggacttgaaggagaatgaacatgaa
agaatgttgattcctgaaatagaaatgattgatgggcacaacaatgaccaaaacaatgtg
gtgattgagaaattagaattttctgctgaccccctgcaggcaatgctatttgacatgatt
cctagtcttggccccaaaaaggctgagcaacctatgaatcttagtgttagagaagagaag
gtaccagaagcctccaatgcagcaacagagccaacaactacaaagaaaaataaggttagc
ttcatggatgctgccaatgacctgctgaaggactggtaa
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