Phaseolus vulgaris (common bean): 137829895
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Entry
137829895 CDS
T03093
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
137829895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137829895
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
137829895
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
V-ATPase_G
Motif
Other DBs
NCBI-GeneID:
137829895
NCBI-ProteinID:
XP_068493017
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Position
7:30516430..30531483
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AA seq
932 aa
AA seq
DB search
MGVPAFYRWLADRYPLCIADVIEDEPAVGDDGVPLPIDASKPNLNGMEFDNLYLDMNGII
HPCFHPDGKPAPATYDDVFKSVFDYIDHLYSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDTAETEAEEERLRKEFEGEQNILSSKDKRETSDSNVITPGTQFMATLSVALQYYIH
TRLNYNPSWRNTKVILSDSNAPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVVTLPGQQDRCFSCGQVGHFAADCQVEDFDTPDDSPIHKKKYQFLN
IWVLREYLQFELEIPNPPFEIDFERVVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMH
IYRKEFSVIGGYLTDVGEVFLDRVERFIQFIAIHEDKIFQKRVCIRLAAENNEEIRARAR
GEMPREPRASLVDKVKLGDPGYKERYYAEKFGVSNLEQIDKIKKDTVLKYVEGLCWICRY
YYQGVSSWKWYYPYHYAPFASDFKDLADQEITFHFGEPFKPFDQLMGTLPASSSSALPKK
YRDLMTDPSSPIFHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKIEDTLTEEE
HFRNSVMLDLLYVNCAHDLASDILSYSRVCSQLAPHERFVRPIDTNASGGMNGYLWFCER
NVFSSIVSCPIRGLQDVDCNQVLNITFLNPQRHNHIPKLPDGVVIPNKVLKATDVKPFPV
LWHEDNIGQRLQTRERPQVPGAKAGSQLGEAAHRLVKNTLNIKSNNRSHGLLEQPPVHHS
MNGLRSPGYGKYYGENASGYNGQYNHHGVMTTPKYGGHNDRQNFKIRDRLQCEEQFHNMK
TEFSSLTTEERERPRSLRVPSSRPITNLQPRFVRNMDPSIPSPKWMTKPQPTDGMPTRDQ
EAALGPTTHDKQTKKVYQVKIRQLDTPESGKQ
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttaccggtggctcgccgaccgctacccgctctgcatcgccgac
gtaatcgaggatgaacccgccgtcggcgacgacggcgttccgttgcctatcgacgcgtct
aaacctaacctcaacggaatggaattcgacaacttgtacttggacatgaacggcattatc
cacccttgttttcaccccgatggcaagccggcacctgctacctatgatgatgtgtttaaa
tctgtatttgattacattgaccatctctattcgttggttcgtccaaggaagcttctctac
cttgcaattgatggtgttgcaccaagagccaaaatgaatcagcaacgttctaggcgcttc
cgagctgcaaaagacactgctgagactgaagctgaagaggaaaggctgaggaaagagttt
gagggtgagcaaaacattttgtcttctaaagacaagcgtgagacttcagactctaatgtc
attacccctggaactcaatttatggcaaccctgtcagtggctctccagtattatatacat
actagactgaactacaatcctagctggcggaatacaaaggttatattgtctgattcaaat
gcacccggtgaaggagaacataaaataatggaatacatccggttacaacgcaaccttcct
ggtttcaatccaaatactcgacattgtttgtatggattggatgctgatttgattatgctc
tccttagctacgcatgaggttcacttctcaatattgagggaggtggttactttacctggt
caacaggataggtgtttttcgtgtggccaagttgggcattttgcggctgattgtcaagtt
gaggactttgatactcctgatgatagcccaattcacaagaagaaatatcagtttcttaac
atctgggtgctgcgtgaatatttgcaatttgaattggagatacccaaccctccatttgag
attgactttgaacgagttgtggacgattttgtatttctatgcttctttgttggcaatgat
ttccttccacatatgccaacattagagatcagggagggggctataaatttattgatgcat
atatacagaaaggaattttctgtcataggtggttatcttactgacgtgggcgaggttttc
ttagatagagtggaacgatttatccagttcattgctattcatgaagataaaatctttcag
aaaagagtttgcattcggctggctgcagaaaataatgaagagattagagctagggcaaga
ggagaaatgcctcgagaaccccgagcctcacttgtggataaggttaaattaggggatcct
ggatacaaggaaagatattatgctgaaaagtttggtgtatcaaatcttgagcagattgat
aaaattaagaaagatactgtcttgaaatatgtggaaggcctttgttggatttgccggtat
tattatcaaggtgtcagctcatggaagtggtactacccatatcattatgctcccttcgct
tctgattttaaagatctagctgatcaggaaataactttccactttggagagccatttaaa
ccatttgatcagctcatgggtaccctacctgcttcaagttcaagtgcactgcctaagaaa
tatagagatttgatgactgatccttcatctcctatttttcacttttaccctgctgacttt
gagattgatatgaacggaaaacgatttgcatggcagggtgtggccaagctgccatttatt
gatgagaagaaattgcttgctgccacaagaaagattgaagatacattaacggaggaagaa
cactttcggaacagtgtgatgcttgatttgctatatgtcaattgtgcacatgatttggct
tcagatatcttatcttattcccgtgtttgtagtcaattagccccacatgaaagatttgtt
cggccaattgacacaaatgctagtggtgggatgaatggatatctttggttttgtgaaaga
aatgttttcagctctattgtatcttgtcccatcagaggattgcaagatgttgactgtaac
caagtcttaaatattacatttcttaacccacaaagacacaatcatatcccgaaacttcca
gatggtgtagtaatacccaacaaggtgttaaaagccactgatgttaaaccttttcctgtg
ctgtggcatgaggacaatattggtcagcgactgcaaacaagagaaaggccacaagtacct
ggagccaaagctggatctcaactgggagaagcagctcatcgacttgttaagaacaccctc
aacattaaatcaaataacagatcccatggattgctggagcaacctccagtccatcattca
atgaacgggcttcgatcgcctggatatggaaaatattatggtgagaacgcaagtggatat
aatggacaatataatcaccatggcgtaatgactacaccaaaatatggtggacataatgac
agacagaattttaagatacgagataggttacagtgtgaagaacagttccacaatatgaaa
actgagttttcttctttaacgacggaggaaagagagagacctaggtcattgagggttcca
agttcaagaccgataaccaatttacaaccccgatttgtgcggaacatggatccttcaata
ccatctccaaaatggatgactaaaccacaacctacggatggcatgcctactagggatcaa
gaagctgcattggggccaacaactcatgataagcagaccaagaaggtttaccaagttaaa
atacgtcagctagatacaccagaatctgggaagcaatag
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