Patella vulgata (common limpet): 126814737
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Entry
126814737 CDS
T09576
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126814737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvul03019
]
126814737
Messenger RNA biogenesis [BR:
pvul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
126814737
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
126814737
NCBI-ProteinID:
XP_050396065
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All DBs
Position
3:72663563..72683095
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AA seq
423 aa
AA seq
DB search
MSQYIQVAEEESDEPIEIPSEEDGTLLLSTLSAQFPTTCGLKYRNPETGTFRGIRLVDGR
LHPPEGAWGLQLYVCVFPKAENKRKGDEGQENPAAKTKRLDQTKCSDLIVLGLPWKTTED
DMRKYFSTFGELILVQVKRDPKTGQSKGFGFVRFSDYEAQKKCISQRHLIDGRWCDVTIP
NSKEGSQHLMNRKIFIGRCSEDISAEDLRNYFSKFGEVVDVFIPKPFRAFAFCTFADPAV
AQNMYGEDHIIKGTSVHVSSAAPKNFDKPDRRGGGSSGGGGGSGGYISSPSSYSSSYSGQ
GGFSPASTHPRPGGDMIKPEPNQLPNNVNMNLLNSAMLAAAQAVLSGQGGQQWGTGMSRD
TNGAQPSSAAPNAGNTNYNAPNQGASNFLGSWGTGEVQSPQTPQNQGQYGGWGGGHGRSG
TWN
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtatatccaggtggcggaagaagaatcggatgaaccgatagaaatccccagc
gaggaagacggtaccttgttattgtcaactctatcagcacagtttcccacgacatgtggg
ttaaagtatagaaatcccgaaacaggaacttttcgcggaattagacttgtcgatggtagg
ttgcatccaccagaaggtgcatggggcctccaactgtatgtgtgtgtatttcctaaagca
gaaaataaacgcaaaggtgatgaaggtcaagaaaatccagcagctaaaacaaaaagatta
gatcagacaaaatgtagtgatttgatagtgctaggtctgccatggaaaacaacagaagac
gatatgagaaaatatttttcaacttttggtgaattaatactagtgcaggttaaacgagat
cctaaaacaggccaatcaaaaggttttggttttgtcaggttctctgattatgaagctcag
aaaaaatgtatttcacaaagacatttgattgatggacggtggtgtgatgttacgattcca
aattctaaggaaggttctcaacatcttatgaacagaaaaatcttcattggcagatgtagt
gaagatattagtgcagaagatttaagaaattattttagtaaatttggagaagtggtcgat
gtcttcattcctaaaccattccgagcatttgcattttgtacatttgcggatcctgctgtt
gctcagaatatgtatggtgaagatcacattatcaaaggcactagtgttcatgttagcagt
gcagcacccaaaaattttgataaaccagatcgtcgtgggggtggtagtagcggtggtggt
ggtggaagtggtggctatatttccagtccctccagttacagctcaagctacagtggacaa
ggtgggttcagtccagcctctacacatcctagacctggtggagacatgatcaaaccagag
cctaatcagctacccaacaatgttaatatgaatttacttaattcagccatgcttgcggca
gctcaagcagtccttagcgggcaggggggacaacaatgggggactggtatgtcgagagat
actaatggtgctcaaccatcatctgctgctcctaatgcaggcaacacaaattataatgcc
cctaatcagggagcatctaatttcctgggaagttgggggactggggaagtccagagtcca
caaactccccagaatcaaggtcagtatgggggatggggtggagggcatggaagatcggga
acatggaattaa
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