Patella vulgata (common limpet): 126816520
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Entry
126816520 CDS
T09576
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
pvul
Patella vulgata (common limpet)
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pvul04054
]
126816520
Enzymes [BR:
pvul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126816520
Pattern recognition receptors [BR:
pvul04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
126816520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
ResIII
DEAD
RIG-I_C
Helicase_C
CARD
CARD_2
AAA_19
SLFN-g3_helicase
IstB_IS21
SNF2-rel_dom
nSTAND3
AAA_7
AAA_22
DUF648
Motif
Other DBs
NCBI-GeneID:
126816520
NCBI-ProteinID:
XP_050399096
EnsemblRapid:
ENSPVUG00005002468
ENSPVUG00005003643
ENSPVUG00005003968
LinkDB
All DBs
Position
3:complement(68882563..68902100)
Genome browser
AA seq
1042 aa
AA seq
DB search
METQIEKDEDLDNIEVLKGTFEQSREFLITDVFKKIVLETIHSAELLPFLSAIIPKGDIQ
SKIRKLDRKGHYQEGAKELINYIHLDCKVEGKWAIFMSSLEQAELVSLHGLLNDLSSLNE
NDEEDIELLGLYSAQIIDHIKLTDSGILIYLHSNKVITRDDMEKISSCDCNRDAFMELFS
HIYRKSKDWYKIFLESLYKDKQLQLVELLDPKFLEKKKNLEANKKYVWHPRDNDIQENIL
EDSGEAYSSGDYASNNPENIEPNLFGSVEDQAKIQDKIGDNLMDTSSLPEKSYDDKELKE
INTDKMNIDEPEHKRADEDGDKKTIELRDYQKDLCKEALQGQNVIICAPTGSGKTIVAIN
IIKEHLSKKFGIKKVAFLVNQVALAEQQFNLCKQYLNCRTERLTGDTQNNDKIPLGELLD
CNEVIVLTAQILVDAIKEHVIKDVSAFSLIIFDECHHTKARHPYNQIMHMYMDIKLKNQL
PGATNEMEVDELPPPVLPQIIGLTASVGVGKARKVSEASEHILTLCANLDTAKICTARAY
EDDMRKFVNVPSLDIERCDKRENDVYHQTIVEIMQKIETDMQNSKFLLKKDEELEEFKKY
LKPPGRKGHDSYTQWVAKLKRGIAAVNEHNARKFYVTCYKMLEIYNNALIINNDCRSIDS
LTYIEEEFSKTITLNQSKNTQKELMEYYTDKKQKLQRLCDDPKNVNPKLEKLKKMIMDGF
RENPDSRAIVFAKTLALVQKLKLWMEETPELKRLNLKPETVTGARASADKGGMTRNRQVE
VLDYFKDGDAKIIIATSVAEEGLDITKCNLVIRYDHVTNEIAMVQSRGRARAEASKFKLV
ASDDANTARKEEMNLSREMMMKQALIDLEGKPEKEFKESILEYQKKAKSVRDMDKLIRNG
RILKDDEFILRCFGCTDFACISTDIRTIRHSQYTVVDKSFKTRYITKDHKAPMEFHGFLK
KSKIFCKSCNHDWGIEALYQNAEYPLIKIESFVIEDSDGKKTTIKKWKNIPFYVQEISDD
DLRRRFLEASGNISDIDSEDEN
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggagacacagatagaaaaagatgaagatttagacaatattgaagtacttaaaggcaca
tttgaacaaagcagggaatttctcatcactgatgtttttaagaaaatagtactggaaaca
attcacagcgctgaactattaccatttctctcggcaattattcctaaaggagatatacaa
tccaagataagaaagttagatagaaaaggacattaccaagaaggggctaaagaacttata
aactatattcaccttgattgcaaagtagaaggaaaatgggcaatctttatgagctcactg
gaacaagcagaattagtttccctacatggtcttttgaatgacttaagtagtttaaatgag
aatgatgaagaagacattgaacttctgggcttgtattctgcccaaattattgatcatatt
aaactaacagacagtggtattcttatatatttgcacagtaataaggtcattactagagat
gatatggagaaaatatcctcgtgtgactgtaatagagatgcattcatggaactcttcagt
catatttatagaaaaagtaaagattggtataaaatatttctggaaagtctttacaaagac
aagcaactgcaactggtagaattgttggatccgaaatttctagaaaaaaagaaaaatttg
gaagctaataaaaaatatgtgtggcatccccgtgataatgacatacaagaaaatatactt
gaagacagtggtgaagcatacagctcgggtgattatgcaagtaataatcctgagaacatc
gaacctaatttattcggaagtgttgaagatcaagccaagatacaagataaaattggtgat
aatttaatggacacatcatcattgccagaaaaatcatacgatgataaggaattgaaagaa
atcaatacagataaaatgaatattgatgagccagaacataaaagagcagatgaagatggg
gataaaaaaacaatagaattaagagattatcagaaagatctgtgtaaggaagctttacaa
ggccaaaatgttattatatgtgcacctacaggtagtggaaaaacaattgtcgcaataaat
atcattaaggaacatttgagtaagaaatttggaataaaaaaggtagcatttttggttaat
caagtggcattagctgaacaacagtttaatctatgtaaacaatatctaaactgtagaact
gaaagattaactggagacacacaaaacaatgataaaataccccttggagaacttcttgat
tgtaatgaagtaattgtgttgacagcacagatattggtagatgctataaaagaacatgtt
atcaaggatgtttcagctttttcacttattatatttgatgaatgtcatcacaccaaggct
cgacatccatataaccagattatgcatatgtatatggacataaaattaaaaaatcagcta
cctggagcgacaaacgaaatggaggtggatgagttacctccccctgttctgccacagatc
attgggttgacagcatcagtgggagtagggaaggcaaggaaagtgagtgaggcgtcagaa
catattttgacgttatgtgctaatctagatacagcaaagatatgtacagcaagagcctat
gaagatgatatgagaaagtttgttaatgtccctagtttagatattgaacgttgtgacaaa
cgagagaacgatgtttaccaccagactatagtagaaatcatgcaaaaaatagaaactgac
atgcagaattcgaaatttctgttgaagaaggatgaagaattagaagaattcaaaaaatat
ttaaagccaccaggaagaaaaggacatgatagttacactcaatgggtagctaagttaaag
agaggcattgctgccgttaatgaacataatgctcgtaaattctatgtaacatgctataaa
atgttagagatatataataatgcacttattataaataatgactgccgttcaatagatagt
ttaacatatatagaagaggagttctcaaagaccataacactgaatcagtcaaaaaataca
caaaaagaattgatggaatattacacagataagaaacagaagctacaaagattatgtgat
gaccctaaaaatgtaaatccaaaattagaaaagctaaaaaaaatgataatggatggtttt
agggaaaatcctgattcaagagccattgtatttgcaaagacattagctttggttcagaag
ttaaaactatggatggaagaaacccctgaattaaagaggctgaatctaaaaccagaaact
gttactggagcaagagcttctgccgacaaaggaggtatgactagaaacaggcaagtagaa
gtattagattattttaaagatggtgatgcaaagataattatagccacatctgttgctgaa
gaaggtctggacataacaaagtgtaatttggtcatcagatatgatcatgtgacaaatgaa
attgccatggttcaatctagaggtcgggccagagcagaagctagtaaatttaaacttgtg
gccagtgatgatgctaatacggctagaaaagaagaaatgaatttatcaagggaaatgatg
atgaaacaagctttaatagatctagagggcaaacctgaaaaggaattcaaagaatccatt
cttgaatatcagaaaaaagcaaaatctgtgcgagatatggacaaacttataaggaatggt
cgtattttaaaagatgatgaatttattttacgatgttttggatgcacagattttgcatgt
atttctactgatattcgtacaattagacattcacaatatactgtggtagataaaagtttc
aaaacaaggtatataacgaaagatcataaagctcccatggagtttcacgggtttctaaag
aaaagtaaaatcttttgtaaatcttgcaatcatgattggggaattgaagctctgtatcag
aatgctgaataccctttaatcaaaattgaaagttttgtcattgaggattctgatggtaaa
aaaacaaccatcaaaaagtggaaaaacatcccattctatgtccaagaaatcagtgatgat
gatttgcgccgcaggttcctggaagcatcggggaatatttctgacattgattctgaagat
gagaattaa
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