Pseudomonas vanderleydeniana: HU752_009975
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Entry
HU752_009975 CDS
T07587
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pvw
Pseudomonas vanderleydeniana
Pathway
pvw03030
DNA replication
pvw03410
Base excision repair
pvw03420
Nucleotide excision repair
pvw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU752_009975 (ligA)
03410 Base excision repair
HU752_009975 (ligA)
03420 Nucleotide excision repair
HU752_009975 (ligA)
03430 Mismatch repair
HU752_009975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvw03032
]
HU752_009975 (ligA)
03400 DNA repair and recombination proteins [BR:
pvw03400
]
HU752_009975 (ligA)
Enzymes [BR:
pvw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU752_009975 (ligA)
DNA replication proteins [BR:
pvw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU752_009975 (ligA)
DNA repair and recombination proteins [BR:
pvw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU752_009975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU752_009975 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU752_009975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU752_009975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QXI30254
UniProt:
A0A9E6TTX1
LinkDB
All DBs
Position
2209398..2211755
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAQTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLYHELKALEAEHPELVTADSPTQ
RVGSAALTAFTQVRHEIPMLSLGNAFEEVDMREFDRRVNEGLDLPTADLFGGGAAVEYSC
EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGTGWPATLEVRG
EVFMSKAGFERLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSQ
DIADSHIGNLQQLKAWGMPISHELKLAKGIDQCLDYYRAIGERRNALPYEIDGVVFKVNS
LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPENARAVQIPESCPVCGS
HVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKTIEQ
LVDENLIASPADLYTLKREDIVDLEGFAELSTSNLLQAIADSKQPSLARFIYALGIPDVG
EETAKVLARSLGSLERVMQALPSVLTYLPDIGLEVAHEIHSFFEDEHNRSVIGQLLERGL
VLQDQGELGAEFAASTTLGGLIAKLDISSVGPTAAEKLAAKFGSVEGIINADWLDLRQAL
NEKPAKAVREFFDVPGNAERALAVEAQLRDFGMHWQSEKKAVEGLPLTGQTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVGFLKT
HGIEA
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccagacccgtattctagagctgcgtgctgaactggatcagcacaactac
cgctaccacgtgctcgacgaaccgagcattccggacgccgaatacgaccgcctgtaccac
gagctcaaggccctggaagccgaacacccggaactggtcaccgccgactcgccgacccag
cgtgtcggcagcgcggcgctgacggcgttcacccaggtccgccatgaaatcccgatgctg
agcctgggcaacgccttcgaagaagtcgacatgcgcgagttcgatcgccgggtcaacgaa
ggcctcgacctgccgaccgctgatctgttcgggggcggtgcggccgtcgagtacagctgc
gagccgaaactcgatggcctggcggtcagcctgctgtaccaggacggcctgctggtgcgc
ggcgccacccgtggcgacggcaccaccggcgaagacatcagcgtcaacgtgcgcaccgtg
cgcaacattccgctcaaactgcaaggcactggctggccggcgaccctcgaagtgcgtggc
gaagtgttcatgtccaaggccggcttcgaacgcctcaacgccgcgcaggcggaggcgggt
ggcaagaccttcgccaacccgcgcaacgccgccgcgggcagcctgcgccagctcgattcg
aagatcactgccagccgtccactggagttctgctgctacggcctgggtcaggtgtcgcag
gatattgccgacagccacatcggcaacctgcagcagctcaaggcctggggcatgccgatc
agccatgaactgaaactggccaagggtatcgaccaatgcctggactactaccgcgccatc
ggcgagcgccgcaacgcgctgccctatgaaatcgacggcgtggtgttcaaggtcaacagc
ctggcgtcccagcgcgagctgggcttccgtgcccgtgagccgcgctgggcgatcgcccac
aagttcccggcgatggaagaactcaccgagctgctcgacgtcgagttccaggtcggccgt
accggtgcggtcaccccggtggctcgcctgaagccggtcaaggtcgccggcgtcacggtc
tccaacgccacgctgcacaacatggacgaagtggcgcgcctgggcctgatgatcggtgac
actgtgatcatccgccgagccggcgacgtgattccacaggtggtccaggtggtcaccgag
cgccgcccggaaaacgcccgtgcggtgcagattcccgagagctgcccggtgtgtggttcc
catgtcgagcgcacccaattgataaagcgcagcaagggccgcgagaccatcagcgaaggc
gcggtgtaccgctgcgtcggccgcctggcctgcggcgcgcaactcaagcaggcgatcatc
cacttcgtctcccgtcgggcgatggacatcgagggcctgggcgacaagaccatcgagcag
ttggtggatgaaaacctgatcgcgtcgccagccgacctctacaccctcaagcgcgaagat
atcgtcgacctcgaaggtttcgccgaactgtcgaccagcaacctgctgcaggccatcgcc
gacagcaagcagccaagcctggcgcgcttcatctacgccctgggcatcccggatgtgggc
gaggagaccgccaaggtcctggcccgctcgctgggctcgctggagcgcgtcatgcaggcg
ttgccctcggtgctgacctacctgccggacatcggcctggaagtggcccacgagatccac
agcttcttcgaggacgagcacaaccgcagcgtcatcggccaactgctcgaacgtggcctg
gtgctgcaggaccagggcgaactgggtgccgagtttgccgccagcaccaccctgggcggg
ctgatcgccaagctggacatcagctcggtggggccgacggcggcggagaaactggcggcc
aagttcggttcggtcgaaggcatcatcaacgccgactggttggacctgcgccaggcgctg
aatgaaaagccggccaaggccgtacgggagttcttcgatgtgccgggcaatgccgagcgg
gccttggcggtcgaagcgcagctgcgtgatttcggcatgcactggcagagcgagaaaaag
gctgtggaaggcttgccgctgaccggccagacctgggtgctgaccggttcgctggaactg
atgagccgcgacgtcgccaaggacaagctggaaagcctgggcgccaaggtggcgggctcg
gtgtcggccaagacccactgcgtggtcgcgggcccgggtgccggctccaagctgaccaag
gccaacgaactgggtctcaaggtgctggacgaagaagcgttcgtcggtttcttgaaaacc
cacggtatcgaagcctga
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