Pistacia vera (pistachio): 116109296
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Entry
116109296 CDS
T07386
Name
(RefSeq) ABC transporter I family member 20-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116109296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116109296
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116109296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_23
Arf
AAA
ORC-CDC6-like
nSTAND3
AAA_25
AAA_30
AAA_7
Zeta_toxin
AAA_28
Motif
Other DBs
NCBI-GeneID:
116109296
NCBI-ProteinID:
XP_031251394
LinkDB
All DBs
Position
Unknown
AA seq
328 aa
AA seq
DB search
MAVMENSKPTVEINGLKFTYPGIDGHPPPGSTPLIDDFSLTLNAGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFDVPIQMDVS
AEKMVFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEI
TVDLDVLARADLLKFLKKECEVRSATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMNQ
VKEISKLSLMRTVESWLRKERDEERKRRKERKASGLAEFGEQVEGSRVTGDPARAAVRAL
NNGWAAGRLQSTVAGEENFFLSSNRVLR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgatggagaattcaaaaccaacggtggagatcaatggactgaagttcacatat
ccagggatcgacggtcatcctccgccgggttctactccactgattgacgatttctcactt
actctcaatgctggagatcgctgccttcttgtcggatcaaatggcgccggcaaaacgacg
atattgaagatactcggaggaaaacacatggtagagcctcacatggtgagggtacttggc
aggtctgctttccacgacaccgctttgacctcctctggtgatctcagctaccttggagga
gagtggaggcgggaggttgcttttgcagggtttgatgttccaatacaaatggatgtttcg
gcagagaaaatggtatttggagtagcaggtattgatcctcaaagaagagctgaactaatc
aaggtcttagatattgatctgtcatggagaatgcataaggtatctgatggtcagagaaga
cgtgttcaaatttgtatgggtctcctcaggcctttcaaggtccttcttctggatgagata
acagttgatcttgatgtgctagcaagggctgatctcctcaagtttctgaagaaggaatgt
gaagtgcgtagtgccacaattatctatgctacccatatatttgacggtttggagaactgg
ccatctcatattgtgtatgtggctcatgggaagttacaattggcaatgccaatgaatcaa
gttaaggagattagcaagctgtcactaatgagaacagtggagagttggctgaggaaggaa
agagatgaggagaggaaaagaagaaaagaaagaaaggcaagtggtcttgctgaatttgga
gaacaagttgagggaagccgtgtaactggggatccagctcgtgcagccgttcgtgcactg
aacaacggttgggctgcaggaaggctgcagtccacagttgctggtgaagagaactttttc
ttgagctcaaacagagttctgaggtag
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