Pistacia vera (pistachio): 116133342
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Entry
116133342 CDS
T07386
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
116133342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116133342
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
116133342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
116133342
NCBI-ProteinID:
XP_031274919
LinkDB
All DBs
Position
Unknown
AA seq
945 aa
AA seq
DB search
MGVPAFYRXLADRYPRSIADXVEEEPMADGNGVVTPVDVSKPNPNGIEYDNMYLDMNGII
HPCFHPEGKPAPASYDDVFKSIFDYIDHIFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKEFEEAGKILARKEKPETSDSNVITPGTQFMAMLSVALQYYIQ
SRLNHNPGWRFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITFPGQQEKCFLCGQAGHLAAECRGKSGDNAADGNGVDDAPIHKK
KYQFLNIWVLREYLQYDLDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMHVYRREFAAMGGYLTDGGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQSMEYNES
LKARRESTEEPQAPAEDRVKLGEPGYKDRYYAEKFDVSNPLEIDQIKKDVVWKYVEGLCW
VCRYYYQGVTSWQWFYPYHYAPFASDLKDLSDYEITLFPGEPFKPFDQLMGTLPAASSSA
LPEKYRNLMIDSSSPIYKFYPSDFEVDMNGKRFAWQGVVKLPFIDEKKLLTQTKKLEAAL
TEEEQLRNSVMHDLLYVSSGHPLSRQISLYYQQNYWLPKHERFFWRIDTNASGGMNGYIW
LYERNVLCCFVSSPVRGLPHIECNQVLNITYFNPEKHKHIPEPPKGVIMPDKILTDIDIK
PFPTLWHEDNSRRQQGRDRPHLPGAMAGPVLGEAAHRLVKNTLNYKPNGSSGLVEQLMYR
NIPYPVTRPRPAGPSGNERGFGDDPNSNNGYYYNMQGIVSNSRSPNPSNGVQGNRHNSRM
QDRYQYQEQYGDMRTGMSHMRIEESIRSRPPAGTHYRMPNSGYSGNSNQQFAQNMNPLPS
PPTNWINKQVPGDNRMYTNGVYEKQQVKTVYQAKTTQLSPEDILK
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgggggttccggcgttttaccgtnggttggcagatcggtacccgcggtcgattgctgac
ngggtcgaggaggagccgatggcggacggtaacggagttgttacccccgtcgacgtgtcg
aaacctaaccctaacggcatagaatatgataatatgtacttggacatgaacgggattatt
catccttgttttcaccccgaaggcaagcctgcacctgcctcctacgacgatgtatttaaa
tctatatttgattacattgaccatatattctcgttggttcgtccaagaaagcttctctat
atggcaattgatggagtggcgccgagagctaaaatgaatcagcagcgttctcggcgcttc
agagctgcaaaggatgctgctgaggctgaagctgaagaagaaaggttaaggaaagaattt
gaggaagctgggaaaatcttggctcgtaaagaaaagcctgaaacttctgattcaaatgtc
atcactcctggcacacaatttatggccatgctatcagtagcacttcagtactatatacaa
tctaggttgaaccacaatccagggtggcggtttacaaaggttatactttctgatgcgaat
gttcctggtgaaggagagcacaaaatcatgtcttacattcgattgcagcgcaaccttcct
ggttttgatccaaacactcggcattgtctgtatggcctagatgcagatttgattatgttg
tctttagccacacatgaggttcacttttcaatattaagagaggtgatcacttttcctggg
caacaggaaaaatgttttctttgtggtcaagctggtcatttagcagctgagtgtcgtggt
aaatcgggcgataatgctgcagatgggaatggggtggatgatgctccaattcacaagaag
aagtatcagttcctaaacatttgggtgttgcgagaatatttgcaatatgatttggacata
cctaatccaccatttccaataaactttgagcgaatagtggatgattttgtgtttttgtgt
ttctttgttggcaatgactttctcccacatatgccgacattggaaattagagagggtgct
ataaatttactgatgcatgtttatagaagggagttcgctgccatgggtggttatcttact
gatggtggtgaggttttgttagacagagtagagaaatttatccagtctgttgctgtatat
gaagatcaaatttttcagaagaggactcgtatacaacagtctatggagtataatgagagt
cttaaagcaagaagagagtctactgaagagccacaggcaccagctgaggatagggttaaa
ttgggggagcctgggtataaagataggtattatgctgagaagtttgacgtatcaaatcca
ctggagattgatcaaattaagaaagacgtggtttggaagtatgtggaaggtttatgttgg
gtttgtcgctattactaccaaggtgtcacctcttggcaatggttttatccataccattat
gctccatttgcttcggatctcaaagatctgtctgactatgaaataacactttttccggga
gaaccgtttaagccttttgatcagctcatgggaaccctgccagctgctagttccagtgct
ttgccagaaaaatacagaaatttgatgattgattcgtcatcacctatctataaattctat
ccttctgattttgaggttgacatgaatggtaaacgctttgcatggcagggtgttgtgaaa
ttgccatttattgatgagaagaagttgcttactcaaacaaagaagcttgaagccgcttta
acggaagaagaacagttacgaaatagtgtgatgcatgatttattgtatgttagttctggt
catcctctgtctcgacaaatttctttatactatcagcaaaactattggttacctaaacat
gaaagatttttttggaggattgatacaaatgccagtggtggaatgaatggatacatttgg
ttgtatgagaggaatgtgttatgttgtttcgtctcttcacctgtcaggggattgccacac
atagagtgtaaccaagttttaaacattacttattttaatcctgaaaagcataaacacatc
ccagaacctcccaagggtgtaatcatgcctgataagatcttaactgatatagacattaaa
ccatttcctactctatggcatgaagataatagccggcgtcaacaaggcagagacaggcca
catttacctggagcgatggctggccctgtgttgggagaagcagctcatcgtcttgttaag
aatacacttaactacaaacctaatggttcttctgggttagttgagcaactgatgtaccgt
aatatcccatatccagttactagacctagaccagctggaccctctggaaatgaaagggga
tttggcgatgacccaaattctaataatggatattactataatatgcaaggcatagtgagt
aactctagatctcccaatccatcaaatggtgtgcaaggcaacagacacaactctaggatg
caggacaggtatcaataccaagaacagtatggtgatatgaggactggtatgtcccatatg
agaatagaagaaagtataagaagtaggcctcccgcagggacgcattacagaatgcctaat
tcaggatactcggggaattcaaaccagcagtttgcgcagaacatgaatccacttccatct
ccacccaccaattggattaataaacaagtacccggagataatagaatgtatactaatgga
gtatatgagaagcagcaagtgaagacggtttatcaggccaagacgacacaactgtcccca
gaagatatcttgaagtaa
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