Pistacia vera (pistachio): 116135855
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Entry
116135855 CDS
T07386
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116135855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvy03041
]
116135855
Spliceosome [BR:
pvy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116135855
Complex C
U5 SnRNP specific factors
116135855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
116135855
NCBI-ProteinID:
XP_031277422
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MDDSLYDEFGNYIGPGIESDRESDADEEDEDLPDKAAEDEPVSDGEGAANGWITAANDVD
MDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFEVGVKDSSTY
VSTQFLIGLMSNPALVRNVALVGHLHHGKTLFMDMLIEQTHHMSTFDLNSEKHMRYTDTR
IDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLIVDA
ADGVLVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNHISA
GSTTAGNVQVIDPAAGNVCFASASAGWSFTLHSFAKLYVKLHGVPFDADKFAARLWGDMY
YHPDTRNFKKKPPVSGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNAAY
KLNVRPLLRLACSSVFGAGSGFTDMLVKHIPSAKDTAARKVDHIYTGPKNSMIHKAMVDC
DPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPDDEEDMTVKEVT
KLWIYQARDRIPISSAPPGSWVLIEGVDASIMKTATLCNMDYDEDVYIFRPLQFNTLPVV
KTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELY
SEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVSID
WSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLLGAVKDSIVQ
GFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLM
EPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLR
YHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVS
INKFFDEAMVVELAQQAADLHQQMI
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgatgagtttggaaactacattggacctggaatagagtccgac
cgagagagtgatgcagacgaagaagatgaagaccttccagacaaggctgctgaggatgaa
cctgtgtcagatggtgagggtgcagccaacgggtggattactgctgctaatgatgttgat
atggataaccagattgtccttgctgaggataagaaatactacccaaccgcagaagaggtt
tacggtgaagatgttgaaactttggtcatggatgaggatgagcagcctcttgaacaaccc
attattaaacctgtgaggaatatcaagtttgaggttggggtgaaagattcttcaacttat
gtatcaacccagtttcttattggtcttatgtcaaatcctgctttggtacggaatgttgca
cttgttgggcacttgcatcatgggaagaccctttttatggatatgttgattgaacaaaca
caccatatgtctacatttgatctaaatagtgagaagcacatgagatacacagatacaagg
attgatgagcaagaaagaaggatatcaatcaaggcagttccaatgtcgcttgttttagag
gatagcaattcaaaatcatacctgtgtaacatcatggacacccctggtcatgtcaatttc
tctgatgaaatgactgctgctctcaggcttgcagatggtgctgttttaattgttgatgct
gctgatggggtgctggtgaacacagagagggctatacgccatgcaatccaagagcgcctg
cccattgtagttgtcatcaacaaggttgacaggttgataacagaactgaagctgcctccc
aaggatgcttaccataaattgaggcatacaattgaagtcattaataaccacatttctgct
ggttcaaccactgctggaaatgttcaagttatagatccagctgctggaaatgtctgcttt
gcaagtgccagtgcaggatggtccttcactttgcattcatttgctaaattatatgtcaaa
ctccatggggtcccatttgatgctgataagtttgcagctcgtctttggggggacatgtac
tatcatccagatacaaggaatttcaagaagaaaccccctgtgagtggaggggaaagatcg
tttgtccaatttgttcttgaacccctgtacaaaatatatagccaagtgattggagaacat
aagaagagtgtggaggcaactcttgcagaacttggtgtaactcttagcaatgcagcttac
aaattgaatgtcaggcctctgctcaggttggcttgtagctcagtttttggtgcaggctcg
ggctttactgatatgttggtgaagcatataccttctgccaaagacactgcagcaaggaaa
gtagaccatatatatacaggacccaaaaactctatgattcacaaggccatggtagattgt
gatccttctggcccccttatggtcaatgtgaccaagctgtatcccaagtctgattgcagt
gtttttgatgcttttggtagggtttacagtggtacaattcagacagggcagactgtacgt
gtgttgggagaaggctattccccagatgatgaggaggacatgactgtaaaagaagtaaca
aaattatggatttatcaagctcgagataggatacccataagcagtgcgcctccaggttct
tgggttctaattgaaggtgttgatgcatcaattatgaaaactgccactctctgtaatatg
gattatgatgaagatgtgtacattttccggccactacaattcaatacccttccagtggtg
aaaacagctacagaacccttaaatcctagtgagttgcctaaaatggtggagggtcttagg
aaaattagcaaaagctatcctctagccataactaaagttgaggagtctggggagcatact
attttaggtactggagagttgtacttggattcaattatgaaagatcttagagagctttat
tctgaagttgaagtcaaggtggcagatcctgtagtctcattctgtgaaacagtggtagag
tcttcatcgatgaaatgttttgcagaaacacccaacaagaaaaataaaatcaccatgatt
gcagagccactggagagaggtcttgcagaagatattgagaatggtgttgtaagcattgat
tggagtcgaaagacacttggtgatttcttcaaaacaaaatatgactgggatttgctggcg
gctcgatccatatgggcatttggccctgataagcagggacctaatattttattagatgat
acacttccaactgaagttgacaagaacttgctgggtgcagtcaaggattccattgttcaa
ggatttcagtggggagctcgagaaggacccctctgtgatgagcccatcagaaatgtcaag
tttaaaatagttgatgcaaggattgctcctgaacctctgcatcgaggatctggtcagatg
attcccactgctcgtcgtgtggcctattcggctttccttatggccaccccgcggcttatg
gaaccagtgtattatgtggagatacaaactccaatcgattgtgtctctgcgatctacaca
gtattatctcgcaggcgtgggcacgttacagctgatgttcctcaaccagggaccccagct
tatattgttaaggcatttttacctgtaattgaatcatttggtttcgagacagatttgagg
taccatactcaagggcaagcattttgcctctcagtctttgatcactgggctatagttcct
ggagatccccttgacaagagcatagttttgcggccacttgaacctgccccaatccagcac
cttgcgcgtgaatttatggtcaagacaaggcgtagaaagggtatgagtgaagatgtgagc
ataaacaagttcttcgatgaagccatggtggtggagcttgcccaacaggcagctgatctt
catcagcaaatgatatga
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integrated database retrieval system
