Pseudoxanthomonas winnipegensis: MWN52_11350
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Entry
MWN52_11350 CDS
T09190
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pwi
Pseudoxanthomonas winnipegensis
Pathway
pwi03030
DNA replication
pwi03410
Base excision repair
pwi03420
Nucleotide excision repair
pwi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pwi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MWN52_11350 (ligA)
03410 Base excision repair
MWN52_11350 (ligA)
03420 Nucleotide excision repair
MWN52_11350 (ligA)
03430 Mismatch repair
MWN52_11350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pwi03032
]
MWN52_11350 (ligA)
03400 DNA repair and recombination proteins [BR:
pwi03400
]
MWN52_11350 (ligA)
Enzymes [BR:
pwi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MWN52_11350 (ligA)
DNA replication proteins [BR:
pwi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MWN52_11350 (ligA)
DNA repair and recombination proteins [BR:
pwi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MWN52_11350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MWN52_11350 (ligA)
MMR (mismatch excision repair)
DNA ligase
MWN52_11350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MWN52_11350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
WJI14243
LinkDB
All DBs
Position
complement(2535776..2538334)
Genome browser
AA seq
852 aa
AA seq
DB search
MSPAKTPQARVTELRQQLDDASYRYHVLDEPNIPDAEYDRLLRELDELEAAHPELVTPDS
PTQRVGAVASGRFAEVRHALPMLSLGNAFDDAEVEDFVRRIAERLGRRTLKFSAEPKLDG
LAISLRYEQGMFVQGATRGDGTTGEDVTANLRTVRAIPLRLRVAGMGSGESGVGKGKSGA
ASAIPHSPFPIPSVLEVRGEVYMPRAAFEAYNEQARLHGGKVLANPRNGAAGSLRQLDAR
ITAQRPLAFYAYGVGEVEEGALPDTHSGTLQRLREWGFPVSDLSQVVEGAEGLLRYYREI
GQKRDSLPFDIDGVVYKLDDVAGQREMGFVSRAPRWALAHKYPAQEQATTVEDIEIQIGR
TGAATPVARLAPVQVAGVTVTNATLHNADQIARLDVRVGDAVIVRRAGDVIPEVVSVILE
RRPAGTAPWQMPARCPVCGSDIVREEGAAVWRCSGELSCPAQRKEAIRHFVSRRAMDVDG
LGEKFIEVLVDAGVVQGVADLYTLDLDQLLQLRLVTGAETPEGFLREAREHLAAGAYAKL
EATLARVRGDGDAVPETWQADLLRAGLPAFDWNRKKIATKWAENLVAALEASKRTTLERF
LFALGIEHVGESTAKVLAAWFGDLELVRRLPWPVFKRVPDIGGEVARALGRFFEQSGNQQ
AIDDLLARGVEMVDSHPPSALLREGLDLATLLVDMEIPKLTRIRATALAAAMPQVAQILA
ADQDALVAAGLPKDTAAALVEWRDADDHADLLQATGAALARLDAITPQASAIQAGPLTGQ
TVVLTGSLESMTRDEAGARLEALGAKVAGSVSKKTAFVVAGSEAGSKLTKAQDLGIEVWD
EARLIAFLDQHA
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgagcccggccaagaccccccaggcgcgcgtgaccgaactgcgccagcagctggatgac
gccagctaccgctaccacgtcctcgatgagcccaacatccccgatgcggaatacgaccgc
ctgctgcgcgagctggacgagctggaggccgcccatcccgagctggtgacgcccgattcg
ccgacccagcgcgtcggcgcggtggcctcgggccgcttcgccgaggtgcgccacgcgctg
ccgatgctgtccctgggcaacgccttcgacgacgccgaggtggaggacttcgtgcggcgc
atcgccgaacggctgggacggcgcaccttgaagttctcggccgagcccaagctcgatggc
ctggcgatcagcctgcgctacgagcagggcatgttcgtgcagggcgccacgcgcggtgat
ggcaccacgggcgaggacgttacggccaatctgcgtacggtgcgggccattccgctgcgg
ttgcgtgtggcgggaatggggagtggggaatcgggagtcgggaaaggcaagagcggagct
gcttctgccattccccattctccattccccattcccagcgtcctggaagtccgtggcgag
gtatatatgccgcgggcggcgttcgaggcctataacgaacaggcgcgcctgcatggtggc
aaggtgctggccaatccgcgcaatggcgcggccggttcgctgcgccagctggatgcgcgc
atcaccgcgcagcggccgctggcgttctatgcctacggcgtcggcgaggtcgaggagggc
gcgctgccggacacgcactcgggcacgctgcagcgcctgcgcgaatggggcttcccggtc
agcgacctgtcgcaggtggtcgaaggcgccgaggggctgttgcgctactaccgcgagatc
gggcaaaagcgcgattcgctgccgttcgacatcgacggggtggtctacaagctggacgac
gtggccggccagcgcgagatgggcttcgtctcgcgcgcgccgcgctgggcgcttgcgcac
aagtatccggcgcaggaacaggccaccacggtggaggacatcgagatccagatcggtcgc
accggcgcggccacgccggtcgcacgcctggcgccggtgcaggtggccggggtcaccgtc
accaacgccaccctgcacaacgccgaccagatcgcgcgcctggacgtgcgcgtgggcgat
gcggtgatcgtgcgccgcgccggcgacgtgatcccggaggtggtcagcgtaatcctcgag
cgccgtcccgccggcaccgcgccctggcagatgccggcgcggtgcccggtatgcggctcg
gacatcgtgcgcgaggagggcgcggcggtgtggcgctgctcgggcgagctgagctgcccg
gcccagcgcaaggaggccatccgccacttcgtctcgcgccgggcgatggacgtggacggg
ttgggcgagaagttcatcgaggtgctggtcgatgccggcgtggtccagggcgtggccgat
ctctacacgctcgacctggatcagctgctgcagctgcgcctggtcaccggtgccgagacg
ccggagggcttcctgcgcgaggcacgggagcatctggccgccggcgcgtacgcgaagctg
gaggccacgctcgcccgcgtgcgcggcgacggcgatgcagtgccggagacctggcaggcc
gacctgctgcgcgccggcctgccggccttcgactggaaccgcaagaagatcgcgaccaag
tgggccgagaacctggtcgccgcgctggaggccagcaagcgcacgaccctggagcgcttc
ctgttcgccctgggcatcgagcatgtcggcgagagcacggccaaggtgctggcggcgtgg
ttcggcgatctggagctggtgcgcaggctgccctggcccgtgttcaagcgcgtgccggac
atcggtggcgaggtggcgcgcgcgctggggcgcttcttcgaacagtccggcaaccagcag
gccatcgacgacctgctggcgcgcggggtggagatggtcgacagccatccgcccagcgcg
ctgctgcgcgaaggcctggacctggccacgctgctggtcgatatggagatccccaagctg
acccggatccgcgccaccgcgctggccgcggcgatgccgcaggtcgcccagatcctcgcg
gccgaccaggacgcgctggtcgccgccggcctgcccaaggacaccgccgccgccctggtc
gaatggcgcgacgcggacgaccacgccgacctgctgcaggccaccggcgcggccctggcg
cgcctggacgcgatcacgccccaggccagcgcgatccaggccgggccgctgaccggccag
accgtggtgctcaccggcagcctggaatcgatgacccgcgacgaggccggcgcccggctc
gaggcgctgggcgccaaggtcgccggcagcgtgtcgaagaagaccgccttcgtggtcgcc
ggcagcgaggccggttccaagctgaccaaggcccaggacctgggcatcgaggtctgggac
gaggcgcggctgatcgccttcctggaccagcacgcgtga
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