Pleurodeles waltl (Iberian ribbed newt): 138258948
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Entry
138258948 CDS
T10800
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138258948 (LSM3)
09123 Folding, sorting and degradation
03018 RNA degradation
138258948 (LSM3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138258948 (LSM3)
03041 Spliceosome [BR:
pwl03041
]
138258948 (LSM3)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138258948 (LSM3)
mRNA degradation factors
5'-3' decay
Lsm complex
138258948 (LSM3)
Spliceosome [BR:
pwl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
138258948 (LSM3)
Complex C
U2 snRNP components
138258948 (LSM3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
YfkB
vATP-synt_E
RimP_C
Peptidase_M16_M
Motif
Other DBs
NCBI-GeneID:
138258948
NCBI-ProteinID:
XP_069062392
UniProt:
A0AAV7N5J6
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All DBs
Position
9:60683278..60713676
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AA seq
102 aa
AA seq
DB search
MADEIDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgaaatagaccagcaacaaaccacaaataccgtagaagagcctcttgatctc
atcaggctcagtttggatgagcgaatctatgtgaaaatgagaaatgaccgagaactccgc
ggcagattaaatgcgtatgaccaacatttgaacatgattttgggagatgttgaggagaca
gtaaccacaatagagattgatgaagaaacctatgaagagatatataagtccacaaagcgg
aacatacccatgttatttgtacgaggcgatggtgttgtactcgtagctccaccactgagg
gtcggctga
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