Pleurodeles waltl (Iberian ribbed newt): 138260218
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Entry
138260218 CDS
T10800
Symbol
ABCD4
Name
(RefSeq) lysosomal cobalamin transporter ABCD4
KO
K05678
ATP-binding cassette, subfamily D (ALD), member 4 [EC:
7.6.2.8
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl02010
ABC transporters
pwl04146
Peroxisome
pwl04977
Vitamin digestion and absorption
pwl04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
138260218 (ABCD4)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
138260218 (ABCD4)
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
138260218 (ABCD4)
04980 Cobalamin transport and metabolism
138260218 (ABCD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pwl04131
]
138260218 (ABCD4)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pwl02000
]
138260218 (ABCD4)
Enzymes [BR:
pwl01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.8 ABC-type vitamin B12 transporter
138260218 (ABCD4)
Membrane trafficking [BR:
pwl04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
138260218 (ABCD4)
Transporters [BR:
pwl02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD4 subgroup
138260218 (ABCD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_30
AAA_16
FtsK_SpoIIIE
ArsP_1
DEAD
AAA_22
DLIC
nSTAND3
AAA_7
NACHT
ORC-CDC6-like
AAA_5
AAA_29
nSTAND1
DUF815
RsgA_GTPase
AAA_19
AAA
DUF6079_1st
AAA_23
TsaE
Sigma54_activat
ATPase
Motif
Other DBs
NCBI-GeneID:
138260218
NCBI-ProteinID:
XP_069064600
LinkDB
All DBs
Position
9:991144653..991365709
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AA seq
605 aa
AA seq
DB search
MEERKDAGTKGRRPRLDLQFLQRLLRILRVLFPHWLSRNTLMFGTLLFVALLAQLVIYQV
GVIPSQYYGVLGNRDLDAFRSLTMVAIVLIIINSTLKSFDEFIRNLIYINWRKNLTECLH
RSYFLGQVYYTLNVLRKDIDNPDQRISQDVERFCKQLSSMASKLLISPFTLAYYTYQCFN
STGWLGPVSIFSYFVIGTVVNKILMGPIISTLVQQEKLEGDFRFKHLQIRVNAESAAFYR
AGQVEHMRTNRRLQNLLQTQRDLMSKELWLYIGINTFDYLGSILSYVVIAIPIFSGVYGQ
LGPAELSALVSKNAFVSIYLISCFSQLIDLSTTVSDVAGYTHRIGELQETMEELVQKQKD
CDAEAEPSWNFKSLSGEPLVTVDTAFILDRVSFSAPSSDHPLVKDLSMKIAQGNNVLIVG
NTGTGKTSLLRVLAGLWESTKGSIQRPSCFGPHGILFLPQRPYFTDGTLREQVIYPLKEI
YPDSGSVDDERILRFLEMTGLSNLLTRTGGLDHKVAWNWYDVLSPGEMQRLSFARLFYLQ
PKYAVLDEATSALTEEVENELHRACKQLGMTLISVGHRTSLEKFHDWTLKLCGAGAWELT
RLKKQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcgtaaggatgccgggacgaagggtaggaggcctcggctggacctgcagttt
ttacagcgacttctcaggatactacgtgttctctttcctcattggctgtcccggaacact
ctcatgtttggaactctgttatttgtggcccttttggcacagctggtgatttaccaggtg
ggggtgattcccagccagtattatggagtcctgggcaatcgggacttggatgccttccgc
agcttgaccatggtcgccattgttttaatcattatcaactcaacgttgaaaagctttgac
gagttcatccgtaacctgatctacataaattggaggaagaatctaacggagtgtcttcac
cggtcctacttcctgggccaagtgtactacaccctgaatgtgctgcgcaaggacattgac
aaccctgaccagcgaataagccaggatgtagagcgtttctgcaaacaactgagctcgatg
gcgagtaagctgctcatctcaccattcaccctggcgtattacacataccagtgcttcaac
agcactggctggctcggacctgtgagtatcttcagctattttgtcattgggacagttgtc
aacaagatcctgatgggacccatcatatcaacattggtgcagcaggagaagctggaggga
gatttcaggttcaagcacctacagatccgagtgaatgcagagtcagcggctttctacaga
gctggtcaggtggagcacatgcgcacaaaccggcggctgcagaaccttctccagacccag
agagacctgatgtcgaaggagctgtggctatatattgggatcaacacatttgactatctg
ggcagtatcttgagctacgttgtcatcgcaatccctatcttcagcggagtttatggacag
cttggtccagcagagctgagtgccctcgtcagcaagaatgcatttgtgtcaatatacctg
ataagctgcttcagtcaacttattgacttgtccaccacggtgtctgatgtggctggttac
actcacaggattggggaactccaggagaccatggaggaacttgtccagaagcagaaagac
tgtgacgcagaagctgaaccgagttggaactttaaaagtctttcaggggagccattggtg
accgtggatacagcatttatcctggatagagtgtctttctctgcaccatcctctgatcat
cctttggtgaaggacctgagtatgaaaattgcacaaggaaacaatgttctgatcgttggg
aacactggcacgggcaagacctccctgcttagagtcctggccggtctctgggagagtaca
aaaggcagtattcagagaccttcctgttttgggccccatgggatcctttttctaccacag
aggccctacttcacagatggaacattgcgtgagcaggtgatctatcctctaaaggagatt
tatccagattcggggtcggtagatgatgagaggattctgaggttcctggagatgactggg
ctgtcaaatttactgaccagaactggaggtctggaccacaaggtggcctggaactggtat
gatgtcctgtctccaggggagatgcaaagactctcttttgcacgactgttttacctgcag
ccaaagtatgcagtgctggatgaggcaacaagcgccctgactgaggaagtggagaatgag
cttcacagagcttgcaaacagttgggaatgaccctaatcagcgtgggacaccgcacaagc
ctggaaaagtttcatgactggacattgaaactttgtggagcaggagcatgggagctaacc
aggctgaagaaacaatga
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