Pleurodeles waltl (Iberian ribbed newt): 138266282
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Entry
138266282 CDS
T10800
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
138266282 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pwl03000
]
138266282 (KDM2B)
04121 Ubiquitin system [BR:
pwl04121
]
138266282 (KDM2B)
03036 Chromosome and associated proteins [BR:
pwl03036
]
138266282 (KDM2B)
Enzymes [BR:
pwl01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
138266282 (KDM2B)
Transcription factors [BR:
pwl03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
138266282 (KDM2B)
Ubiquitin system [BR:
pwl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
138266282 (KDM2B)
Chromosome and associated proteins [BR:
pwl03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
138266282 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
138266282 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
Motif
Other DBs
NCBI-GeneID:
138266282
NCBI-ProteinID:
XP_069071004
LinkDB
All DBs
Position
11:complement(914998901..915714068)
Genome browser
AA seq
1292 aa
AA seq
DB search
MEAQRGSARRLRAVDRTRYEENEDLSDVEEITSVRSFSLEEKLNSGSYNADFVHVMEGAD
FTYEYVQREALKIPLLFRRKEGLGIKMPDQNFSVRDVKLLVGSRRNVDVMDVNTQKNVDM
TLAQFVRYYETPETEREKLYNVISLEFSHTKLEKIIKRPTVIDLVDWVDNMWPQHLKEQQ
ADSTNVLSEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKVFWLIPPTLQNL
EFYEEWVLSGKQADIFLGDKVSGCQKIELKQGYTFFIPSGWIHAVYTQADSLVFGGNILH
SFNIPMQLHIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVHCLTKHSHLIKEYQQESMLI
EARTKTSTDSFSSDSQLDMEEESSESHNREEKDDIVEKSAKLSADGSSSPISTNSDGKDT
PGNTQNTAAIGYFKRTLSNESDESVKSPTPVDYSKTPEDSPATEVSARWTHLTEFELKGL
KALVEKLESLPDNKKCVPEGIEDPHALLENMKSVLKEHGEDDQNLAISGIPVVSWPKKSP
KSAGFADGSLPGQWHIMNKAAGRPKGKIPPSSTVKLAASRSTAGARRRRTRCRKCEACLR
TECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDSVEVEEEKF
NVMLMECSICNEIIHPGCLKIKESEGVINDELPNCWECPKCNHAGKTGKAHKQKRGPGFK
YASNLPGSLLKEQKPNRENTEVPEATQRKIELEETPITEPEDLPQKQPIDSILRRKSDEV
HLKRKRKIEKPQEPGVRKRAIILPLRVLCRQHFLKRLKLVKEEKLFRKKKRSLKTPEERA
LMAQTLTRLKQEPEEELPVEAPPQTQESDQSRPSSPTAGPSTEGGEPEERKTLKIRRRKK
IPNKELSKELSKELTQEIQKTENSLANENHQPIKSEPESENEEPNQPFLLDERLHPISKG
LNGTPRDLVANLTSTPRSITRPAPSLSPPKCVPLERHVIRPPPISPPPDSLPLVNGASHV
MRREVWMSVFSYLPPRDLCICMRVCRTWNRWCCDKRLWTKIDLNRSKSITPLMLSGIIRR
QPVTLDLSWTNISKKQLSWLINRLPGLRNLLLSGCSWVAVSALCSASCPLLRTLDLQWVE
GLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVDLRLAGLDITDASLLLVIRHMPLLSKLD
LSYCNHLTDHSINLLTAAGTSTRDSLSDINLSDCNKITDQCLTYFKRCGNICSLDFRYCK
QVTKESCEQFIAEMSVIVQFGQVEEKLLRKVS
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggaggcacagagaggatctgcaagaagattgcgtgctgtggaccgaacgaggtacgag
gagaacgaggacctctccgacgtggaagaaatcaccagcgtcaggagcttcagcctagaa
gaaaagctaaacagcggctcctacaatgcggacttcgtgcacgtcatggaaggggcagac
tttacctatgaatatgtgcaaagggaggctctaaagattccgcttctgtttcgaagaaaa
gaaggactaggaattaaaatgccagaccagaacttcagtgtgagagacgtgaaactttta
gtgggaagtcggcgaaatgtggatgtgatggatgtcaacacacaaaagaacgttgatatg
accttggctcagtttgtaagatattacgaaacaccagagacggaacgagaaaagctgtac
aacgtcatcagtttggaatttagccacacaaaactagagaaaataatcaagcgaccgaca
gtgattgacttggttgattgggtagacaatatgtggccacagcatttgaaggagcagcaa
gcagactccacaaatgtattatctgaaatgaagtatccgaaagttaaaaagtactgttta
atgagtgttaaaggctgcttcactgacttccacatagactttggagggacatctgtgtgg
tatcacgtctttcgtggaggaaaggtattttggttgattccaccaaccttgcagaattta
gaattttatgaagaatgggtgctctctggaaaacaagctgatatcttcctgggagataaa
gtcagcggatgtcaaaagattgaattgaaacaaggctatactttttttattccatcagga
tggatccacgccgtctacacccaggccgactccctggtcttcgggggcaacattctgcac
agctttaacatccccatgcagctgcacatctacgagatcgaggacaggacgcgggtgcat
gccaaatttcgctatcctttctactatgagatgtgctggtatgtcctagaaagatacgtg
cattgtctgacgaagcactctcatctcatcaaagagtaccagcaagaatcaatgttaatt
gaagctcgcacaaagaccagcacagatagcttctcgtctgattcccaattagacatggaa
gaagaatcttctgagtcccataatcgggaagaaaaggatgacattgtggaaaagagtgct
aaattatcagcagatggctcatcttcacccatcagcacaaattcagatgggaaggatacc
ccaggcaatacacaaaatacagcagccattggctatttcaaaagaacactgtccaatgag
tcagacgagagtgtgaagtctccaacacctgttgattattctaaaactccagaagattct
ccagctactgaagtctctgcacgatggactcatcttacagagtttgagcttaaagggttg
aaagcccttgtggaaaaacttgaatcacttccagacaacaagaaatgtgtcccagaaggc
attgaagaccctcatgctctactagaaaatatgaagagcgtcctgaaggaacatggtgag
gatgaccaaaatctagctatttctggtattcctgtggtgtcctggcctaaaaagagtccg
aagtctgcaggatttgctgatggaagtcttccgggccagtggcatataatgaataaggca
gctggaagacccaaaggcaagattcctccctcctctacagtgaagttagctgctagccgt
agcactgcaggagcccgcaggagacgaacacgatgccgcaagtgcgaggcctgtctgcgc
acagaatgtggcgagtgtcacttttgcaaggatatgaagaagtttggagggcctggaagg
atgaaacagtcctgcattatgagacagtgcattgctcctgtactgcctcacactgctgtc
tgcttggtgtgtggagaagctgggaaggaagattccgtggaggtggaagaagagaaattc
aatgttatgctgatggaatgctccatatgtaatgaaataatacacccaggatgccttaaa
ataaaggaatctgagggtgtgatcaacgacgagcttccaaactgttgggaatgtccgaag
tgcaatcatgctggaaaaactggcaaagcgcacaagcaaaaaagggggccgggatttaaa
tatgcttccaacctaccgggatcacttctaaaggaacagaagccaaatcgtgaaaacaca
gaagttccagaagctacacaaagaaaaatagagctggaggaaactcctataacggaacct
gaagaccttcctcaaaagcaacctatagattctattctaaggagaaaatcagatgaagtg
cacttgaaacgaaaacgaaaaatcgagaaacctcaagagcctggtgttagaaaacgggcc
attatcctccccttgcgtgttctctgcaggcaacacttcctaaaaaggctaaaacttgtt
aaagaagaaaagctcttcaggaagaagaagagatcattgaaaaccccagaagaacgagcg
cttatggcccagacattgacacgtttaaaacaggagccagaagaagagctgccagtagaa
gcaccaccacaaacgcaagaaagcgaccagtccaggcccagttctccaaccgctgggccc
agcacagaagggggtgaacccgaagagaggaaaacacttaagatcaggcggcgaaagaag
attcccaataaagaactaagtaaggagcttagtaaggagctgacacaggaaatacaaaag
actgagaatagccttgcaaatgaaaatcaccaacccataaagtccgagccagagagtgaa
aatgaggagcccaatcagcccttcctccttgatgaaagactgcatccaatcagtaagggg
ttaaacggaactccaagagaccttgttgctaatctcacaagcactccacgaagtataact
cgaccagccccttctttatcgccaccaaaatgtgttccactggagcgccatgtaatcagg
cccccgcccatcagtcctcccccagactctctaccgctggtgaatggtgcatcccatgta
atgcgacgggaggtctggatgagcgtctttagctacctccctcccagggacttgtgcatt
tgtatgcgggtttgcagaacatggaatcgatggtgctgtgacaagcgattgtggaccaaa
atcgatttaaaccgttctaaatcgatcactccacttatgctgagtggcatcattagaagg
cagcctgtgactcttgacttgagctggactaatatctcaaaaaagcaactgagctggctc
ataaatcggcttccaggccttcgaaaccttctattgtctgggtgttcatgggttgctgtt
tctgcactctgtagcgcaagttgtccattactccgaactcttgatctgcagtgggtggaa
ggattaaaagatgcacagatgagggacctcttgtcccctcctacagacaacagaccaggt
cagattgacaacaggagtaaactgcgcaacattgttgatctacgcttggctggtctggac
ataaccgatgcatcacttctattggtgattcgacatatgcctttactttccaaactagac
ctaagttactgcaaccatctgactgatcattctatcaaccttcttactgctgcagggact
tctacccgtgattctctatcggatataaacctttcagattgcaataagattacagatcag
tgcctcacgtacttcaaacgctgtggtaatatatgttcacttgacttccgatactgtaag
caagtaacaaaggaaagctgcgagcaatttatagctgagatgtctgtgattgtacagttt
ggtcaagtggaggagaaactcctgagaaaagttagctga
DBGET
integrated database retrieval system
