Pleurodeles waltl (Iberian ribbed newt): 138299567
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Entry
138299567 CDS
T10800
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138299567 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pwl03041
]
138299567 (EFTUD2)
Spliceosome [BR:
pwl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138299567 (EFTUD2)
Complex C
U5 SnRNP specific factors
138299567 (EFTUD2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
138299567
NCBI-ProteinID:
XP_069094037
LinkDB
All DBs
Position
6:complement(222504409..222851385)
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AA seq
973 aa
AA seq
DB search
MDTELYDEFGNYIGPELDSDDEDDDDIGRGDKDADVADEDEEDEYMGDQDDDHPGMQVVL
HEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQALPATVYEMDFL
ADLMDNPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILLTEQERGV
GMKSTPVTMVLPDTKDKSYLFNIMDTPGHVNFSDEITAGFRISDGVVLFIDAAEGVMLNT
ERLIKHAVQEHLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLLSMYSTDENLV
LSPLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYQEFAKRLWGDIYFNPKTRKFTKK
APSSSAQRSFVEFVLEPLYKILAQVVGDVDTSLPHTLEELGIHLTKEELKLNIRPLLRLV
CKKFFGDFTGFVDMCVQHISSPKTGAKAKIEHNYMGGIDSDLGEAMSECDPDGPLMCHTT
KMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYQI
EVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSE
LPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPV
VTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQ
TKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPL
CDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAP
ADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLS
VFHHWQIVPGDPLDKSIIIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLL
ELAKQDVVLNYPM
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggatactgaactgtatgatgagtttgggaactatattggacctgaactggactctgat
gatgaagatgacgatgacattggaaggggtgacaaagatgcagatgtggctgacgaggac
gaagaagatgagtatatgggagaccaagatgatgatcaccctggcatgcaggtggttctg
catgaggataagaagtattatccaacggcagaggaagtatacggtcctgaagtagaaacg
attgtgcaagaagaggacacgcaacctctcactgaacccattattaagccagtgaagact
aagaagttttctttaatggaacaggctcttcctgccacggtgtacgagatggacttcctg
gctgacctgatggacaatccagagctgattagaaatgtgacattgtgcgggcatctacat
catggcaagacctgctttgtggactgcctgattgaacagactcatccagagattaggaag
cgctatgaccaggatctttgctacactgatatactcttgactgagcaggagagaggagtt
ggcatgaagagtacaccagtgacgatggtgcttccagacaccaaagacaaatcctatctc
ttcaacatcatggacaccccaggtcatgtaaacttttctgatgagatcacagctgggttc
cggatctcagatggtgtggtgctgtttatcgatgcagctgagggggtaatgttgaacaca
gagcgcctgatcaagcatgcagtccaagagcacttggcagttacagtttgcatcaataag
attgatcggctgatcctggagctgaagttgccacccacagacgcatactacaaactgcgc
cacattgtggacgaagtcaatggcttgctcagcatgtattctacggatgagaacctggtg
ttgtccccgctgctcgggaatgtctgctttgccagctcccagtacagcatctgcttcaca
ctgggctcatttgccaagatttattctgacacctacggtgacatcaactaccaagaattt
gcaaagcgactttggggcgacatctacttcaatcccaaaacgcggaagttcacaaagaaa
gcgccatccagcagcgcccagcgcagttttgttgaatttgtgctagagccactatacaag
atcctggctcaggttgtcggtgatgtggacacctccctaccccacacactagaagagctg
ggaatacatttaaccaaggaggagctgaaactgaacatcaggccacttttgcgtctagtc
tgcaagaagttctttggggacttcacaggctttgtggatatgtgtgttcaacatatctcc
tcaccgaagactggagcgaaggccaaaattgagcacaattacatgggtggcattgactca
gacctgggagaagcaatgagcgagtgtgatcctgatggtcctctgatgtgtcacacaacg
aagatgtacagtacagatgatggagtgcaatttcatgcttttggcagggttctgagcggc
acaatccatgctggacagccagtgaaggtgcttggtgagaattataccctggaagatgaa
gaagattctcaaatctgcactgtgggtcgcctttggatctcagtagctaggtaccagatt
gaagtgaaccgcgttcctgctggtaactgggtccttattgagggagtggaccagcctatt
gttaagactgcaactattacagagcccagaggcaacgaggaggcacagattttccgacca
ttaaagtttaacactacttcggttatcaaaattgctgtggagcctgtcaatccctcagag
ctgcccaagatgttggatgggttaagaaaagtcaacaaaagctacccgtccctcaccacg
aaggtggaggaatcaggagagcatgtcatcctgggtacaggagagctgtacctggactgt
gtgatgcacgatttacggaagatgtactctgaaattgatatcaaggtggcagatccagtg
gtcacattttgtgagacagttgtagagacttcctctctgaagtgcttcgctgagacaccc
aataagaaaaacaagataaccatgattgcagagccactggaaaaggggctggctgaggac
attgagaacgaagtggtgcagattacttggaacagaaagaagttgggtgagttcttccaa
acaaagtatgactgggatttgctggctgcccgatctatctgggcctttggacctgatgcc
actgggcccaacattttggtagatgacacattgccatctgaggtggacaaggcattgctg
ggttcagtaaaagacagcattgttcaaggcttccaatggggaaccagagaaggccccctg
tgtgacgagttgattcgtaatgtgaagtttaagatccttgatgcggtcattgcccaggag
cccctgcaccgaggaggagggcagatcattcctacggcccggagagtcgtctactctgcc
ttcctcatggccaccccacgtctgatggagccatactactttgtggaggtgcaggcacct
gctgattgtgtatctgctgtttacactgttctagccagacgcaggggtcatgtaactcag
gatgcaccaataccaggctctcctctttatactattaaagccttcatcccagccattgac
tcttttggatttgaaactgacctgaggacacatactcagggacaggcgttctcattgtca
gtcttccaccactggcagattgtgcctggtgaccccttggataagagcatcataatccgc
cccctggagcctcagcctgcaccccatttggccagagagttcatgatcaaaacaagacgt
aggaagggtctgagtgaagatgtcagtatcagcaagtttttcgacgaccctatgttgttg
gagttggccaaacaggacgtggtcttaaattacccgatgtga
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