Pleurodeles waltl (Iberian ribbed newt): 138300341
Help
Entry
138300341 CDS
T10800
Symbol
SLIT1
Name
(RefSeq) slit homolog 1 protein
KO
K06838
slit 1
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pwl00536
]
138300341 (SLIT1)
Glycosaminoglycan binding proteins [BR:
pwl00536
]
Heparan sulfate / Heparin
Axon guidance molecules
138300341 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
LRRNT
Laminin_G_2
Laminin_G_1
hEGF
LRRCT
EGF_TEN
LRR_1
LRR_9
LRR_14
LRR_EndoS
EGF_3
EGF_Teneurin
EGF_2
EGF_DL_JAG
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
138300341
NCBI-ProteinID:
XP_069095703
LinkDB
All DBs
Position
6:complement(856640345..857328001)
Genome browser
AA seq
1534 aa
AA seq
DB search
MALRSGRAGSMWLRAALWLLVWSAVCQLRAHGCPALCTCSGTTVDCHGLGLRAVPKNIPR
NTERLELNGNNITRINKNDFSGLKQMRVLQLMENQINTVERGVFDDMKELERLRLNRNQL
NSLPELLFQNNQALSRLDLSENAIQAIPRKAFRGATDLKNLQLDKNQISCIEDGAFRALR
GLEVLTLNNNNISTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQ
CTGPLSLRGLNVAEIQKNEFSCAGQVDSSHAQICSLSTGSCPAMCTCSNGIIDCRGKGLT
AIPANLPETMTEIRLELNGIKSVPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRSLNS
LVLYGNKITDLPKGVFSGLFALQLLLLNANKINCIRADAFQDLQNLSLLSLYDNKIQSLA
KGIFASLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRLANKRIGQIK
SKKFRCSAKEQYFIPGTEDYQLNSECNSDVVCPPKCRCESNVVECSNLKLTKIPDRIPQS
TAELRLNNNDISVLEATGIFRKLPHLKKINLSNNKISEIEDGAFEGAVSLSELHLTANHL
ESVRSGMFRGMEGLRTLMLRNNKIGCVHNDSFTGLRNVRLLSLYDNQITTVAPGAFDTLQ
SLSTLNLLANPFNCNCQLAWLGEWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCEE
GLEEMSCVPRPQCPQECTCLDTVVRCSNKHLLSLPKGIPKNVTELYLDGNQFTMVPGQLS
TYKYLQLVDLSNNRINSLSNSSFTNMSQLTTLILSYNSLRCIPPLAFEGLRSLRLLSLHG
NDISSLPDGIFTDVSALSHLAIGANPLYCDCNLRWLSGWVKTGYKEPGIARCAGPPDMDG
KLLLTTPAKKFECQGPPAPNILAKCNPCFSSPCRNQATCQNDPVEIYKCICASGYKGRDC
ETPLNVCSSNPCENGGVCHSKEGGEEDSFMCACLEGFEGPTCGVNKDDCKDSECENGGSC
VDGINDYTCLCPSSYTGEYCEQLIDLCSLEMNPCQHNSKCVITAEGVKCECAPGFVGDNC
SINYNDCKDHRCQNNAQCVDEVNGYSCLCPEGYSGQLCEMLPRASTSPSPCELAECQNGA
KCVDLGNRAICQCLQGFGGAKCEKLLSVNFVDRDTYLQFTDLQNWPRANITLQVSTAEDN
GILLYNGDNDHMAVELYQGHVRVSYDPGSFPSSAIYSAETINDGQFHTVELVTFDQMVNL
SIDGGAPMTMDNFGKHYTLNSDAPLYVGGMPVDVNSAAFRLWQILNGTSFHGCIRNLYIN
NELQDFTKTQMKPGVVPGCEPCRKLLCLHGICQPNTADGPVCHCEAGWAGPHCDQQVNNP
CLGHKCVHGTCIPLDALSYSCQCRDGYKGALCNQQGELYNPCKNLQCHHGRCQISDLGEA
YCECDSGFTGELCDQESECRGDPVRDFHQVQRGYAICQTTRTVSWVECRGSCLNQGCCTG
LRMKRRKYTFECSDGSSFMEEVEKAIKCGCTQCI
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atggctctgaggagcgggcgcgccggctccatgtggctgagggcagcgctctggctgctg
gtctggagtgcggtgtgccagctgcgtgcccacggctgcccggctctgtgtacctgcagt
gggaccacggtggactgccacggactgggactccgggccgtgcccaagaacatccccagg
aacacggagaggctggaattgaacggcaacaacatcacacgaatcaataagaatgacttt
tctggactgaagcagatgcgagttctgcagcttatggaaaaccagatcaacactgtggag
cgtggagtgtttgacgacatgaaggaacttgagaggctacgcctaaaccggaatcagctg
aactctctgccagagctgttgttccagaacaaccaggccctctccagactggatctcagc
gagaatgcaatccaagccatcccaaggaaggccttccgtggagccacagacctcaagaac
ctacagctggacaagaaccagatcagttgtattgaagatggcgcatttcgggctctcagg
ggactggaggttttgacgctgaacaacaacaacatctcgaccatcccagtgtcaagtttt
aaccacatgcccaagctccgcacctttcgcctgcattcaaaccacctcttctgcgactgc
cacttggcatggctgtcccagtggctgcgccaacgaccaactattggcctcttcacgcag
tgcacgggcccactttctctccgcggcctcaatgtggcagagatccagaagaatgagttc
agctgcgcaggtcaagtggattcttctcacgctcagatctgcagcctctccaccggatcc
tgcccagccatgtgtacatgcagcaacggcatcatagactgcagaggaaagggtcttact
gccatccctgccaacctccccgaaacgatgaccgagatccgtctggagctcaatgggatt
aagtctgtgccgcctggtgccttctcgccctacaaaaaactccgcaggatagacctgagt
aacaaccagatttcagagatcgcccccgatgccttccaaggactgcgttccttgaactcg
ctggtactgtatggaaacaaaatcactgatcttcccaagggggtgttcagtggactcttc
gcactgcagctgctgcttctgaatgccaacaaaatcaactgcataagagccgatgccttc
caggacctgcagaacctgtcgctgctctccttgtatgacaacaagatccagagcctagcg
aaaggaatatttgcttctctacgcgcgatccagacactgcatttggctcagaatccattt
atctgtgactgtaacctgaagtggctggcggatttcttgcgaaccaaccccattgagaca
agtggcgcaaggtgtgctagcccacgccgcctcgccaacaagcgcattgggcagattaaa
agcaaaaaattccgatgctcagctaaagagcagtatttcatcccaggaactgaagattat
cagctgaacagcgagtgcaacagtgatgtagtgtgtcctccaaaatgcagatgcgagtcg
aatgtggtggaatgttccaatctgaagctcaccaagatcccggaccgaatcccacagtcc
acggcggaactgcgcctgaacaacaatgacatttcagtattggaggcaacaggaatcttc
aggaaacttccacacctcaagaaaattaatctgagtaataataaaatcagcgagatcgaa
gatggggcatttgagggagcggtgtcactaagtgagttgcacctgacagccaatcatttg
gagtcagtccggagtggaatgttccggggcatggaaggactgagaaccctgatgctgcga
aataacaagataggctgtgtgcacaacgacagcttcactggtctaaggaatgtgaggtta
ctctccctctatgataatcagatcaccactgtcgcccccggagcattcgacacattgcag
tcactctcaactttgaatttgttggctaaccctttcaactgtaactgccagcttgcctgg
ttgggagagtggttgagaaagaggaagattgtgaccgggaatccccgttgccaaaaccct
gacttcctgagacagatccctcttcaagacgtagccttccccgacttcaggtgtgaggaa
ggtcttgaggagatgagctgtgtccccaggcctcagtgtccccaggagtgcacatgtttg
gacactgttgtccgttgcagcaacaagcatctcctgtccctgccgaaaggaattccaaag
aacgtcaccgaactgtatctggatgggaaccagttcaccatggtaccaggacagctctca
acatacaaatacctgcagcttgtggatctcagcaacaataggatcaactctttgagcaac
tcatctttcaccaatatgagccaactcacaacattaatcctcagctacaactccttgcgt
tgcatcccaccattggcgttcgagggcctgcgctccttgcggctgctgtctctccatggc
aatgacatctcaagcctccctgatggaatcttcaccgatgtcagcgcgctctctcaccta
gccatcggcgcgaaccccttgtactgtgattgcaacctgcggtggctttcaggctgggtc
aaaacggggtacaaagagccagggattgcccgctgcgctggcccccctgacatggacggc
aagcttttactcaccactcccgctaagaagtttgaatgccaagggcctccagccccaaat
atcctggccaagtgtaacccgtgcttctccagcccatgccgcaatcaggccacttgtcaa
aatgacccggtggagatttacaagtgcatctgtgcaagtgggtacaagggcagagattgt
gaaacacccctaaatgtatgttccagtaatccatgtgaaaatggtggagtatgccattca
aaggaaggtggggaagaagattccttcatgtgcgcatgcctagaaggctttgaggggcca
acctgtggcgtaaataaagatgactgcaaggacagtgagtgcgaaaacggaggtagctgc
gtcgatggaatcaatgattacacctgcttatgcccttcgtcctacacaggggagtactgt
gaacagctcattgatttgtgttccttggagatgaatccttgccagcacaattccaaatgt
gtcatcacagctgaaggagtaaaatgtgagtgtgcacctggttttgttggagacaactgc
agcatcaactataatgactgtaaggaccatcgttgccagaataatgcccagtgcgtggat
gaagtcaatggatactcctgcctctgccctgaaggatacagtggtcaactttgtgagatg
ctgccacgtgcctccacctcaccaagtccgtgcgaactggcagagtgtcaaaatggggcc
aaatgtgttgaccttgggaaccgcgccatctgccaatgcctgcaaggatttggtggtgca
aagtgtgaaaagctgctgagtgtcaactttgtggacagggacacttacctgcaattcact
gaccttcagaactggccacgggcaaatattactctgcaggtttcaaccgcagaagacaat
ggaatcttgctttacaatggagacaatgaccacatggcagtggagttgtaccagggtcat
gttcgggtcagctacgaccctggaagcttccccagctctgctatctacagtgcagagaca
atcaatgacggccaattccacacagtagagctggtcacctttgaccagatggtgaatctt
tccatcgatggaggagcccctatgacgatggataattttggaaaacattataccttgaac
agtgatgccccactctatgttggtggtatgccagttgatgtaaactctgctgccttccga
ctttggcaaatccttaatggtaccagcttccacggctgtatacgcaacctctacatcaac
aacgagctccaggacttcacgaaaacacaaatgaaaccaggagttgtgccaggttgtgag
ccgtgccgaaagctcctctgcctgcacggcatctgtcaacccaacactgctgatggccct
gtttgccactgtgaggcagggtgggccgggcctcactgtgaccagcaagtcaacaacccc
tgcctaggacacaagtgtgtgcacgggacctgtataccactcgatgccctttcctatagt
tgccagtgtcgggatggctacaagggagctctgtgtaaccagcaaggagagctctacaac
ccctgcaagaacttgcagtgccatcacggacgctgccagatctccgacctgggggaagct
tactgcgagtgcgacagcggcttcaccggcgagctgtgtgatcaagaatctgaatgtcga
ggcgacccagtcagggatttccaccaggtccagagaggctatgccatctgccaaaccaca
cgcacggtctcatgggtggagtgccgcggttcttgcctcaaccagggctgctgcaccgga
ttgcgcatgaaacggaggaagtacacctttgagtgcagtgatgggtcatctttcatggaa
gaggtggagaaagctatcaagtgcggttgcacccagtgcatttag
DBGET
integrated database retrieval system
