Paenibacillus woosongensis: QNH46_21770
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Entry
QNH46_21770 CDS
T09437
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pwn
Paenibacillus woosongensis
Pathway
pwn03030
DNA replication
pwn03410
Base excision repair
pwn03420
Nucleotide excision repair
pwn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pwn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNH46_21770 (ligA)
03410 Base excision repair
QNH46_21770 (ligA)
03420 Nucleotide excision repair
QNH46_21770 (ligA)
03430 Mismatch repair
QNH46_21770 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pwn03032
]
QNH46_21770 (ligA)
03400 DNA repair and recombination proteins [BR:
pwn03400
]
QNH46_21770 (ligA)
Enzymes [BR:
pwn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QNH46_21770 (ligA)
DNA replication proteins [BR:
pwn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QNH46_21770 (ligA)
DNA repair and recombination proteins [BR:
pwn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QNH46_21770 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNH46_21770 (ligA)
MMR (mismatch excision repair)
DNA ligase
QNH46_21770 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QNH46_21770 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
RNA_lig_T4_1
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WHX48648
UniProt:
A0AA95IAY7
LinkDB
All DBs
Position
complement(4688058..4690067)
Genome browser
AA seq
669 aa
AA seq
DB search
MDAMQTMERLVEQLNQYNYHYYTLDQPLVSDKEYDALYDQLTALEAETGIVLPDSPTGRV
GGELLKGFEPHRHLAPLWSLDKAQTEEHLINWNNRVIRLIDDYNSKNPDNPLPSPTYVIE
LKFDGLTLNLTYTDGKLVQASTRGNGVVGEGILAQVKTIKSVPLTIPYREGTIEVQGEGI
MNLSVLAKYNETAAEPLKNARNAAAGALRNLNPRTTAERKLNAYFYNVGYSDNIQFTDHR
EMMDFLKENRFKVNTYIEYFDDFTQVMKALGQIQERRDSLDYLIDGAVIKVTDMRTREVL
GYTDKFPRWAIAYKFEAEETTTILESVSWNVGRTGKITPLARVEPVELAGVTVQNCTLNN
VGDIERKNLKFALGTRVFIRRSNDVIPEILGKVTDEQDGGEIVFPDTCPACGFPLEQRGA
HLFCNNRFDCKPQIVTRITHFASRDAMDIETLSDKTAEQLFEELDIHEPADLYEITFEQL
IKLERFGEKKANNLLDAINKSKGRDLASFLYALGIPNTGKSTTKVLADHFRDLKAIMSAT
EEELMQLPDIGGIVAESIVTFFADPFMQAGIHKMLELGVEAKAPEERSPVKDSFFTGKTV
VLTGTLHQLSRDEATERLEALGAKVTGSVSKKTDLVIAGEKAGSKLTKAKDLGIPVIEDE
NEFVRLLNE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgatgcaaacgatggagcggctcgtcgagcaattgaatcaatacaactatcat
tactataccttggatcagcctctggtaagcgataaggaatatgatgccctgtacgatcag
ttaaccgcgcttgaagcagagacgggcatcgttctgcccgattctccgacgggccgggtt
ggcggagagctgctgaagggcttcgagccgcatcgtcatttggctccgctttggagcctg
gacaaagcgcaaacggaggagcatctgattaactggaataaccgggtaatccgcctgatc
gacgattataacagcaaaaatccggacaatccgcttccgtcgccgacttacgtcatcgag
cttaaattcgacgggctgacgttgaatctgacgtatacggacggaaagctcgtacaggct
tccacgcgggggaacggcgtcgtcggcgaagggattctagcccaggtgaagacgattaaa
tcggtgccgctgacgattccttaccgcgaagggacgatcgaggttcagggcgagggtatc
atgaatttatccgtcctggccaaatacaatgagaccgccgcagagccgctcaagaatgcc
cgcaatgccgctgctggagcgctgcggaatttgaatccgcggacgacggctgaacggaag
ctgaacgcgtatttctacaacgtcggctattccgacaacattcagttcacggaccatcgc
gagatgatggacttcctgaaggagaatcgtttcaaagtcaatacgtatatcgaatacttc
gatgatttcacccaggtgatgaaggcgctggggcaaattcaagagcgcagggattcgctc
gattatctgattgacggagccgtcattaaagtcacggacatgagaactcgcgaagtgctc
ggttatacggataaattcccgagatgggcgattgcttataaatttgaagccgaggaaacg
acgacgattctggagtcggtatcctggaacgtcgggcgtaccggcaaaattacgccgctc
gccagggtcgagcctgtggagcttgccggcgtgacggtgcagaactgtacgctgaacaat
gtcggggacattgagcgcaagaacctgaagtttgccctgggaacccgggtgttcatccgc
cgctccaatgatgtcatcccggaaattctcggcaaagtgaccgatgagcaggatggcggg
gaaattgtgttcccggatacttgtccggcctgcggcttcccgctggagcagcggggagcg
catctgttctgcaacaaccgcttcgattgcaagccgcaaatcgtcacccgcatcactcac
tttgcttcccgggatgcgatggatatcgagacgcttagcgacaagacggccgagcagcta
ttcgaagagctggacattcacgagccggcggatctgtatgagattacttttgagcagctt
attaagttagagcgcttcggggagaagaaggcgaataatttgctggatgcgatcaacaag
agcaaggggcgggatttggcttccttcctgtatgcgcttggcattccgaataccggcaaa
tcgaccacaaaggtgctggccgatcatttccgcgatctgaaagcgatcatgtcagcaacc
gaggaagaactgatgcagctcccggatatcggaggcattgtcgctgagagcatcgttacc
ttcttcgccgacccgttcatgcaggcgggtattcacaaaatgcttgaacttggcgtggag
gctaaagcgccggaggagcgcagccctgtgaaggactcctttttcacgggcaaaacggta
gtgctgactgggacgctgcaccagctcagccgcgatgaggcgacggagcgtcttgaagct
ttgggcgctaaggtaacgggaagtgtatcgaagaagaccgacctcgtcatcgctggcgag
aaagcgggcagcaagctgaccaaggccaaggatcttggcatcccggttattgaggatgag
aatgagttcgttcgattgttgaacgagtag
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integrated database retrieval system
