Pectobacterium wasabiae: A7983_02910
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Entry
A7983_02910 CDS
T04535
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pws
Pectobacterium wasabiae
Pathway
pws03030
DNA replication
pws03410
Base excision repair
pws03420
Nucleotide excision repair
pws03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pws00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A7983_02910 (ligA)
03410 Base excision repair
A7983_02910 (ligA)
03420 Nucleotide excision repair
A7983_02910 (ligA)
03430 Mismatch repair
A7983_02910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pws03032
]
A7983_02910 (ligA)
03400 DNA repair and recombination proteins [BR:
pws03400
]
A7983_02910 (ligA)
Enzymes [BR:
pws01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A7983_02910 (ligA)
DNA replication proteins [BR:
pws03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A7983_02910 (ligA)
DNA repair and recombination proteins [BR:
pws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A7983_02910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A7983_02910 (ligA)
MMR (mismatch excision repair)
DNA ligase
A7983_02910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A7983_02910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Nlig-Ia
YmzB
HeH
Motif
Other DBs
NCBI-ProteinID:
AOR62235
LinkDB
All DBs
Position
complement(638887..640941)
Genome browser
AA seq
684 aa
AA seq
DB search
MKPVKKEPAEVNAVALRVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMRELKALEADHP
ELVTSDSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTF
CCELKLDGLAVSLLYEDGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEV
RGEVFMKHGGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLL
EGGELPASHCKRLKQFKDWGLPVSDRIKLCTGSAEVLDFYRQVEQTRSELGFDIDGVVVK
VDSLALQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAG
VIVSNATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVQAIVFPVACPV
CGSDVERVEGEAVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKT
PADLFRLSAGIMTGLDRMGPKSATNLVNALEKAKSTTLARFLYALGIRDVGESTAANLAA
HFGSLEALFAADEDALLAVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPVGINIHWPEVQ
VVNAEEIDSPFAGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGS
KLAKAQELGIPVIDEAEMIRLLGA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagtgaagaaagaaccagccgaagtgaatgcggtcgcactgcgggtagcggag
ttgcgccgggtcttacgccatcacgaatacaaatatcacgttgaagatgcgcctgaaatt
cctgatagcgaatatgacaaactcatgcgggaactgaaagcattggaggcagatcaccca
gagctggtgacgagtgattctcctacgcagcgcgtcggcgcggcaccgctggcggcattt
gagcaggtacgtcatgaagtaccgatgctatcgttggataacgtatttgatgaagagagc
tatctggccttcagcaagcgaattggtgacaggttgaagaacggtgatgacctgacattc
tgctgcgaactgaaactggatggtttggctgtcagcctgttatatgaagatggcgttctg
gtacaggccgccacgcgtggggatggaacgactggggaaaacatcaccagcaacatccgt
accgttggagcgatcccattgcgccttgagggtgaaaatattccgcgccgtgttgaagtc
cgcggtgaagtgtttatgaagcatggcggttttgaaaagttgaatgaagaggcccgccgc
acagggagcaaagtctttgccaacccgcgtaacgccgctgccggatcgctgcgccagctc
gatccacggatcacggctaaacgcccattgaccttcttctgctatggcgttggccttttg
gaaggcggtgaattgcctgccagtcactgtaagcggttgaagcagttcaaggattgggga
ctgccggttagcgacagaatcaagctctgtaccggctcggctgaggtgctcgatttttat
cgtcaggttgaacagacccgcagtgagttaggtttcgatattgacggcgtcgtcgttaaa
gttgactcgttggcgttgcaggaacgattagggtttgttgctcgtgcgccgcgctgggcg
gtggcctttaaattccccgcgcaggaacagctaacctgggtgcgcgatgtcgagtttcag
gtagggcggacgggggcgattacgcccgttgcgcgtctggaaccggtcgctgtggctggc
gtaattgtcagtaacgccacactgcataatgccgatgaaattgagcgactaggtttgcag
attggcgatcgtgtcattgtgcgtcgagcgggggatgtgatcccgcagatcgtcggtatt
gttgaatctgagcggccagaaaccgtgcaagcgatcgttttccccgtggcttgtccggtg
tgtggatctgacgttgagcgtgtggaaggggaagccgtcacgcgttgtaccggtggtttg
atctgcggtgcccagcgcaaagaggcgctgaagcactttgtttcccgccgtgcgctggat
gttgagggtatgggcgataagatcatcgatcaactggtggaaaaagagtacgtcaaaacg
cccgccgatctgtttcgtctaagtgctgggatcatgacggggctggatcgcatggggccg
aagtccgcgacaaacttggttaatgcgttggaaaaagcgaaaagtaccacgctggcgcgt
tttttgtacgcgttggggatccgtgatgttggcgaatcgaccgccgccaatctggctgcc
cattttggttcgctggaggcactttttgcggcagatgaagacgcgctgctagcagtgccg
gatgtcggtaaagttgttgccgcgcatgtacgccattttcttgaagaagagcacaaccaa
actgtgatccgcgagctgaccgatcctgtcggcatcaacatccactggcctgaggttcag
gtcgtcaatgccgaagagatcgacagcccgtttgcgggaaaaacggtggtattgaccgga
tcgctgagtattttgtcccgtgatgaagccaaagatcggctaacggcgttaggagcaaaa
gtcagtggtagcgtctcgaagaaaaccgatatggtgattgccggtgaggccgcaggctct
aaactggcgaaggcgcaagagttggggattccggtgatcgatgaggcggaaatgatccga
ttattaggggcataa
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