Pseudomonas wayambapalatensis: HU734_017765
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Entry
HU734_017765 CDS
T08016
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pwy
Pseudomonas wayambapalatensis
Pathway
pwy03030
DNA replication
pwy03410
Base excision repair
pwy03420
Nucleotide excision repair
pwy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pwy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU734_017765 (ligA)
03410 Base excision repair
HU734_017765 (ligA)
03420 Nucleotide excision repair
HU734_017765 (ligA)
03430 Mismatch repair
HU734_017765 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pwy03032
]
HU734_017765 (ligA)
03400 DNA repair and recombination proteins [BR:
pwy03400
]
HU734_017765 (ligA)
Enzymes [BR:
pwy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU734_017765 (ligA)
DNA replication proteins [BR:
pwy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU734_017765 (ligA)
DNA repair and recombination proteins [BR:
pwy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU734_017765 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU734_017765 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU734_017765 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU734_017765 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QXI42098
LinkDB
All DBs
Position
complement(3991365..3993695)
Genome browser
AA seq
776 aa
AA seq
DB search
MNAENRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLITPDSPTQR
VGGAALAAFTQVRHEIPMLSLGNAFEEADLREFGRRVVEGLDQAEAVDYSCEPKLDGLAV
SLLYRNGQLVQGATRGDGTTGEDISTNVRTIRNVPLKLHGSGWPEVLEVRGEVYMSKAGF
ERLNAAQAEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGIGQTSASVGDSHIGI
LEQLKVWGMPISPELKHAAGIEECLAYYQDIGARRNALPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVEVPSACPVCGSQVERTQLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLQFEQIVDLEGFAEVSSRKLLEAIEASKRPPLARFIFALGIPDVGEETAKVLAR
SLGSLERVQVALPQVLTYLPDIGLEVAYEIHNFFEDAHNRQVIQQLLDSGMQLQDQGELA
AEFAASTTLAGMIAKLDIPSVGPTGAEKLVDKLGTLDKIIAADGIDLRQALNTKQADAVR
EFFKVEANQQLARAIEAQLEAFGMHWHSEKKTTEGLPLAGQTWVLTGTLERMSRDIAKDK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEEAFVAFLAGQGITV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgaaaaccgaatccacgaactgcgcgccgaactcgaccagcacaactatcgc
tactacgtgctggacgagcccagtgtgcccgacgccgaatacgaccggctgttcaacgaa
ctcaaggcgctggaagccgagcatccgcacctgatcacccccgactcgcctactcagcgc
gttggcggtgcagccctggccgcctttacccaggtgcgccacgagatccccatgctcagc
ctgggcaacgccttcgaagaggctgacttgcgcgaattcggacggcgtgtggtcgaaggg
ctcgaccaggccgaggcggtcgactacagctgcgagcccaagctcgatggtctggcggtg
agcctgttgtaccgcaacggccagctggtgcaaggcgccacccgtggcgacggcacgacc
ggcgaagacatcagcaccaacgtgcgcaccatccgcaacgtcccgttgaagctgcatggc
agcggctggcccgaagtgctcgaagtgcgtggcgaggtgtacatgagcaaggcgggcttc
gaacgcctcaatgccgctcaggccgaagtcggcggcaagacctttgccaacccgcgcaac
gctgccgctggcagcctgcgtcaactggactcgaaaatcaccgccagccgcccgctggaa
ttctgctgctacggtatcggccagacttcggcgagtgtcggcgacagccatatcggcatc
ctcgagcagctcaaggtctggggcatgccgatcagccctgagctcaagcacgccgccggc
atcgaagaatgcctggcctactaccaggacatcggcgcccgccgcaacgcgctgccctac
gagatcgacggcgtggtgttcaaggtcaacagcctggcggcgcagcgcgagctgggtttc
cgtgcgcgtgagccgcgctgggccatcgcccacaagttcccggccatggaagagctcacc
gaggtgctggacgtcgagttccaggtcggccgtaccggcgcggtcactccggtcgcccgt
ctcaagccggtcaaggtggccggggtgaccgtatccaacgccaccctgcacaacatggac
gagatcgcccgcctgggcctgcgcatcggcgacacggtgatcatccgccgtgccggtgat
gtgatcccgcaggtgatgcaggtagtgctcgagcgtcgccccgatgacgcccgcccggtc
gaagtgccgagcgcctgcccggtgtgcggctcgcaggtcgagcgcacccagttggtcaag
cgcagcaagggcaaggaaaccaccagcgaaggggcggtgtatcgctgcgtcggccgcctg
gcctgtggcgcccagctcaagcaggcgatcattcactatgtgtcccgccgggcgatggat
atcgacggtcttggcgagaagagcgtcgagcagttggtcgacgaggggctgatcggttcg
ccggcagacctgtacaagctccagttcgagcagatcgtcgacctggaaggcttcgccgag
gtctccagccgcaagctgctcgaagccatcgaagcaagcaagcgcccgccgctcgcgcgc
ttcatcttcgccctgggcatccccgatgtgggcgaggagaccgccaaggtcctggctcgc
tccctgggtagcctggagcgggtgcaggtggcactgccgcaggtgctgacctacctgccg
gacatcggccttgaagtcgcctacgagatccacaatttcttcgaggatgcgcacaaccgc
caggtcatccagcaactgctcgacagcggcatgcagttgcaggaccaaggcgagttggcg
gcggagttcgccgccagcaccaccctcgccgggatgatcgccaagctcgacatcccctct
gtcggcccgaccggcgccgagaagctggtggacaagctcggcaccctcgacaagatcatc
gccgccgacggcatcgacctgcgccaggccctgaacaccaagcaggccgatgccgtgcgc
gagttcttcaaggtcgaggccaaccagcaactcgcccgcgccatcgaagcccagctcgaa
gcgttcggcatgcactggcacagcgagaagaaaaccaccgagggcctgcccctggccggt
cagacctgggtgctgaccggcaccctggagcgcatgagccgcgacatcgccaaggacaag
ctagaaagcctcggcgccaaggtggcgggctccgtgtccggcaagacccactgcgtggtg
gcaggtccgggggcagggtcgaagctggccaaggccagtgagctgggggttaaggtgctg
gacgaagaggccttcgtcgccttcctggcggggcagggcatcacggtctga
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